Information for 4-TTTCCGAGATGCTAAT (Motif 4)

C G A T A C G T C G A T A G T C A G T C A C T G G T C A C A T G C G T A A C G T T C A G A G T C C A G T T C G A C G T A G A C T
Reverse Opposite:
C G T A C G A T A G C T G C T A C T A G A G T C C G T A A C G T G A T C A C G T G T A C C T A G C T A G C G T A T G C A C G T A
p-value:1e-13
log p-value:-3.142e+01
Information Content per bp:1.729
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.15%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.9 +/- 22.0bp
Average Position of motif in Background8.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.60
Offset:7
Orientation:forward strand
Alignment:TTTCCGAGATGCTAAT---
-------TATGCWAATBAV
 C G A T A C G T C G A T A G T C A G T C A C T G G T C A C A T G C G T A A C G T T C A G A G T C C A G T T C G A C G T A G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.58
Offset:7
Orientation:forward strand
Alignment:TTTCCGAGATGCTAAT---
-------WATGCAAATGAG
 C G A T A C G T C G A T A G T C A G T C A C T G G T C A C A T G C G T A A C G T T C A G A G T C C A G T T C G A C G T A G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

POU3F4/MA0789.1/Jaspar

Match Rank:3
Score:0.58
Offset:7
Orientation:forward strand
Alignment:TTTCCGAGATGCTAAT
-------TATGCAAAT
 C G A T A C G T C G A T A G T C A G T C A C T G G T C A C A T G C G T A A C G T T C A G A G T C C A G T T C G A C G T A G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:TTTCCGAGATGCTAAT
------TTATGCAAAT
 C G A T A C G T C G A T A G T C A G T C A C T G G T C A C A T G C G T A A C G T T C A G A G T C C A G T T C G A C G T A G A C T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.57
Offset:6
Orientation:forward strand
Alignment:TTTCCGAGATGCTAAT
------ATATGCAAAT
 C G A T A C G T C G A T A G T C A G T C A C T G G T C A C A T G C G T A A C G T T C A G A G T C C A G T T C G A C G T A G A C T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

POU5F1B/MA0792.1/Jaspar

Match Rank:6
Score:0.57
Offset:7
Orientation:forward strand
Alignment:TTTCCGAGATGCTAAT
-------TATGCAAAT
 C G A T A C G T C G A T A G T C A G T C A C T G G T C A C A T G C G T A A C G T T C A G A G T C C A G T T C G A C G T A G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

POU3F1/MA0786.1/Jaspar

Match Rank:7
Score:0.57
Offset:6
Orientation:forward strand
Alignment:TTTCCGAGATGCTAAT--
------TTATGCAAATTA
 C G A T A C G T C G A T A G T C A G T C A C T G G T C A C A T G C G T A A C G T T C A G A G T C C A G T T C G A C G T A G A C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

POU3F2/MA0787.1/Jaspar

Match Rank:8
Score:0.57
Offset:6
Orientation:forward strand
Alignment:TTTCCGAGATGCTAAT--
------TTATGCAAATTA
 C G A T A C G T C G A T A G T C A G T C A C T G G T C A C A T G C G T A A C G T T C A G A G T C C A G T T C G A C G T A G A C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

POU2F2/MA0507.1/Jaspar

Match Rank:9
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:TTTCCGAGATGCTAAT---
------ATATGCAAATNNN
 C G A T A C G T C G A T A G T C A G T C A C T G G T C A C A T G C G T A A C G T T C A G A G T C C A G T T C G A C G T A G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

POU2F1/MA0785.1/Jaspar

Match Rank:10
Score:0.55
Offset:5
Orientation:forward strand
Alignment:TTTCCGAGATGCTAAT-
-----AATATGCAAATT
 C G A T A C G T C G A T A G T C A G T C A C T G G T C A C A T G C G T A A C G T T C A G A G T C C A G T T C G A C G T A G A C T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T