Information for 13-GACCCTGACCTGAVDA (Motif 20)

A C T G C G T A A G T C A G T C A G T C C G A T A C T G C G T A A T G C A G T C A C G T A C T G C G T A T A C G C A G T C G T A
Reverse Opposite:
A C G T G A C T A C G T A C G T A G T C C G T A A C T G A T C G A C G T A G T C C G T A A C T G C T A G A C T G C G A T A G T C
p-value:1e-6
log p-value:-1.569e+01
Information Content per bp:1.842
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.0 +/- 27.9bp
Average Position of motif in Background28.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GACCCTGACCTGAVDA
TGACCTTGACCT-----
 A C G T A C T G C G T A A G T C A G T C A G T C C G A T A C T G C G T A A T G C A G T C A C G T A C T G C G T A T A C G C A G T C G T A
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GACCCTGACCTGAVDA
TGACCTTGACCT-----
 A C G T A C T G C G T A A G T C A G T C A G T C C G A T A C T G C G T A A T G C A G T C A C G T A C T G C G T A T A C G C A G T C G T A
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GACCCTGACCTGAVDA
---CCTCACCTG----
 A C T G C G T A A G T C A G T C A G T C C G A T A C T G C G T A A T G C A G T C A C G T A C T G C G T A T A C G C A G T C G T A
A C G T A C G T A C G T T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GACCCTGACCTGAVDA
-----TGACCTYA---
 A C T G C G T A A G T C A G T C A G T C C G A T A C T G C G T A A T G C A G T C A C G T A C T G C G T A T A C G C A G T C G T A
A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GACCCTGACCTGAVDA
-----TGACCT-----
 A C T G C G T A A G T C A G T C A G T C C G A T A C T G C G T A A T G C A G T C A C G T A C T G C G T A T A C G C A G T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:6
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GACCCTGACCTGAVDA
NAGGTCANTGACCT-----
 A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G T C C G A T A C T G C G T A A T G C A G T C A C G T A C T G C G T A T A C G C A G T C G T A
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GACCCTGACCTGAVDA
GCTGACCTTGAACTN----
 A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G T C C G A T A C T G C G T A A T G C A G T C A C G T A C T G C G T A T A C G C A G T C G T A
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T A C G T A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GACCCTGACCTGAVDA
-NNACTTACCTN----
 A C T G C G T A A G T C A G T C A G T C C G A T A C T G C G T A A T G C A G T C A C G T A C T G C G T A T A C G C A G T C G T A
A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GACCCTGACCTGAVDA-
-NNNNTGACCCGGCGCG
 A C T G C G T A A G T C A G T C A G T C C G A T A C T G C G T A A T G C A G T C A C G T A C T G C G T A T A C G C A G T C G T A A C G T
A C G T C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GACCCTGACCTGAVDA
-----TGACCTTGAT-
 A C T G C G T A A G T C A G T C A G T C C G A T A C T G C G T A A T G C A G T C A C G T A C T G C G T A T A C G C A G T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T