Information for 3-GGAGCTGTCCAGG (Motif 2)

C T A G A C T G G T C A C A T G A G T C A G C T T A C G G A C T A G T C A G T C G C T A A T C G A T C G
Reverse Opposite:
A T G C T A G C C G A T A C T G A C T G C G T A A T G C T C G A A C T G G A T C C A G T A G T C A G T C
p-value:1e-74
log p-value:-1.717e+02
Information Content per bp:1.760
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif22.32%
Number of Background Sequences with motif173.4
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets53.8 +/- 26.2bp
Average Position of motif in Background44.8 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GGAGCTGTCCAGG-------
GGAGCTGTCCATGGTGCTGA
 C T A G A C T G G T C A C A T G A G T C A G C T T A C G G A C T A G T C A G T C G C T A A T C G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

REST/MA0138.2/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GGAGCTGTCCAGG--------
GGCGCTGTCCATGGTGCTGAA
 C T A G A C T G G T C A C A T G A G T C A G C T T A C G G A C T A G T C A G T C G C T A A T C G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

PH0169.1_Tgif1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GGAGCTGTCCAGG--
NNNCAGCTGTCAATATN
 A C G T A C G T C T A G A C T G G T C A C A T G A G T C A G C T T A C G G A C T A G T C A G T C G C T A A T C G A T C G A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCTGTCCAGG
CGGAGC--------
 A C G T C T A G A C T G G T C A C A T G A G T C A G C T T A C G G A C T A G T C A G T C G C T A A T C G A T C G
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GGAGCTGTCCAGG
---GCTGTCAA--
 C T A G A C T G G T C A C A T G A G T C A G C T T A C G G A C T A G T C A G T C G C T A A T C G A T C G
A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T

PH0102.1_Meis1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGAGCTGTCCAGG-
AACGAGCTGTCAATAC
 A C G T A C G T C T A G A C T G G T C A C A T G A G T C A G C T T A C G G A C T A G T C A G T C G C T A A T C G A T C G A C G T
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GGAGCTGTCCAGG
---GCTGTG----
 C T A G A C T G G T C A C A T G A G T C A G C T T A C G G A C T A G T C A G T C G C T A A T C G A T C G
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGAGCTGTCCAGG-
AACTAGCTGTCAATAC
 A C G T A C G T C T A G A C T G G T C A C A T G A G T C A G C T T A C G G A C T A G T C A G T C G C T A A T C G A T C G A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

PH0141.1_Pknox2/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGAGCTGTCCAGG-
AAGCACCTGTCAATAT
 A C G T A C G T C T A G A C T G G T C A C A T G A G T C A G C T T A C G G A C T A G T C A G T C G C T A A T C G A T C G A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

PH0104.1_Meis2/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGAGCTGTCCAGG-
AAAGACCTGTCAATAC
 A C G T A C G T C T A G A C T G G T C A C A T G A G T C A G C T T A C G G A C T A G T C A G T C G C T A A T C G A T C G A C G T
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C