Information for 6-GAGGCGGCTGHGTGAC (Motif 6)

C T A G C G T A C A T G C T A G T G A C C A T G A C T G G T A C C G A T C T A G G A C T A C T G A C G T C T A G T G C A T G A C
Reverse Opposite:
A C T G A C G T G A T C C G T A T G A C C T G A A G T C C G T A C A T G T G A C G T A C A C T G A G T C G T A C A C G T G A T C
p-value:1e-16
log p-value:-3.730e+01
Information Content per bp:1.654
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.36%
Number of Background Sequences with motif55.6
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets50.6 +/- 26.6bp
Average Position of motif in Background49.4 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.59
Offset:8
Orientation:forward strand
Alignment:GAGGCGGCTGHGTGAC
--------TGCGTG--
 C T A G C G T A C A T G C T A G T G A C C A T G A C T G G T A C C G A T C T A G G A C T A C T G A C G T C T A G T G C A T G A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:2
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:GAGGCGGCTGHGTGAC-
-------TTGCGTGCVA
 C T A G C G T A C A T G C T A G T G A C C A T G A C T G G T A C C G A T C T A G G A C T A C T G A C G T C T A G T G C A T G A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

Pax2/MA0067.1/Jaspar

Match Rank:3
Score:0.55
Offset:9
Orientation:reverse strand
Alignment:GAGGCGGCTGHGTGAC-
---------NCGTGACN
 C T A G C G T A C A T G C T A G T G A C C A T G A C T G G T A C C G A T C T A G G A C T A C T G A C G T C T A G T G C A T G A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:GAGGCGGCTGHGTGAC---
-------BTGABTGACAGS
 C T A G C G T A C A T G C T A G T G A C C A T G A C T G G T A C C G A T C T A G G A C T A C T G A C G T C T A G T G C A T G A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:GAGGCGGCTGHGTGAC---
-------NTGATTGACAGN
 C T A G C G T A C A T G C T A G T G A C C A T G A C T G G T A C C G A T C T A G G A C T A C T G A C G T C T A G T G C A T G A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

ESR2/MA0258.2/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GAGGCGGCTGHGTGAC--
---AGGNCANNGTGACCT
 C T A G C G T A C A T G C T A G T G A C C A T G A C T G G T A C C G A T C T A G G A C T A C T G A C G T C T A G T G C A T G A C A C G T A C G T
A C G T A C G T A C G T C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GAGGCGGCTGHGTGAC
-AGGVNCCTTTGT---
 C T A G C G T A C A T G C T A G T G A C C A T G A C T G G T A C C G A T C T A G G A C T A C T G A C G T C T A G T G C A T G A C
A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:GAGGCGGCTGHGTGAC----
--------TGAGTGACAGSC
 C T A G C G T A C A T G C T A G T G A C C A T G A C T G G T A C C G A T C T A G G A C T A C T G A C G T C T A G T G C A T G A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GAGGCGGCTGHGTGAC
--TCAGNGAGCGTGAC
 C T A G C G T A C A T G C T A G T G A C C A T G A C T G G T A C C G A T C T A G G A C T A C T G A C G T C T A G T G C A T G A C
A C G T A C G T A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C

PB0147.1_Max_2/Jaspar

Match Rank:10
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:GAGGCGGCTGHGTGAC--
----NNGTCGCGTGNCAC
 C T A G C G T A C A T G C T A G T G A C C A T G A C T G G T A C C G A T C T A G G A C T A C T G A C G T C T A G T G C A T G A C A C G T A C G T
A C G T A C G T A C G T A C G T G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C