Information for 22-GGTTGCAAGAGGH (Motif 27)

C T A G A C T G A C G T A C G T A C T G A G T C C G T A C G T A A C T G G T C A C T A G A C T G G A C T
Reverse Opposite:
C G T A A G T C A G T C A C G T A G T C A C G T C G A T A C T G A G T C C G T A C G T A A G T C G A T C
p-value:1e-8
log p-value:-1.989e+01
Information Content per bp:1.849
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.0 +/- 28.7bp
Average Position of motif in Background73.9 +/- 9.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GGTTGCAAGAGGH
CTGTTGCTAGGS--
 A C G T C T A G A C T G A C G T A C G T A C T G A G T C C G T A C G T A A C T G G T C A C T A G A C T G G A C T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:2
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------GGTTGCAAGAGGH----
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G A C G T A C G T A C T G A G T C C G T A C G T A A C T G G T C A C T A G A C T G G A C T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GGTTGCAAGAGGH
NNCGTTGCTATGGNN
 A C G T A C G T C T A G A C T G A C G T A C G T A C T G A G T C C G T A C G T A A C T G G T C A C T A G A C T G G A C T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GGTTGCAAGAGGH
NCCGTTGCTANGNGN
 A C G T A C G T C T A G A C T G A C G T A C G T A C T G A G T C C G T A C G T A A C T G G T C A C T A G A C T G G A C T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GGTTGCAAGAGGH
NATGTTGCAA-----
 A C G T A C G T C T A G A C T G A C G T A C G T A C T G A G T C C G T A C G T A A C T G G T C A C T A G A C T G G A C T
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGTTGCAAGAGGH--
KGTTGCTAGGMAACA
 C T A G A C T G A C G T A C G T A C T G A G T C C G T A C G T A A C T G G T C A C T A G A C T G G A C T A C G T A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGTTGCAAGAGGH
ATTTCCAAGAA--
 C T A G A C T G A C G T A C G T A C T G A G T C C G T A C G T A A C T G G T C A C T A G A C T G G A C T
C T G A A G C T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGTTGCAAGAGGH--
-GTTGCCATGGNAAC
 C T A G A C T G A C G T A C G T A C T G A G T C C G T A C G T A A C T G G T C A C T A G A C T G G A C T A C G T A C G T
A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

SCRT2/MA0744.1/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GGTTGCAAGAGGH--
--ATGCAACAGGTGG
 C T A G A C T G A C G T A C G T A C T G A G T C C G T A C G T A A C T G G T C A C T A G A C T G G A C T A C G T A C G T
A C G T A C G T T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G

STAT3/MA0144.2/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGTTGCAAGAGGH
-TTTCCCAGAAN-
 C T A G A C T G A C G T A C G T A C T G A G T C C G T A C G T A A C T G G T C A C T A G A C T G G A C T
A C G T G A C T A C G T A C G T G A T C A G T C G T A C C T G A C T A G T G C A C G T A T C A G A C G T