Information for 13-KKGBTTAGCC (Motif 20)

A C G T C A G T C T A G A C T G G A C T G C A T C G T A T A C G A G T C G A T C
Reverse Opposite:
C T A G T C A G A T G C G C A T C G T A C T G A T G A C G A T C G T C A T G C A
p-value:1e-10
log p-value:-2.473e+01
Information Content per bp:1.483
Number of Target Sequences with motif78.0
Percentage of Target Sequences with motif10.85%
Number of Background Sequences with motif2208.4
Percentage of Background Sequences with motif4.73%
Average Position of motif in Targets49.4 +/- 25.8bp
Average Position of motif in Background50.4 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:KKGBTTAGCC
-GGATTAGC-
 A C G T C A G T C T A G A C T G G A C T G C A T C G T A T A C G A G T C G A T C
A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T

PH0015.1_Crx/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----KKGBTTAGCC-
CGTTGGGGATTAGCCT
 A C G T A C G T A C G T A C G T A C G T A C G T C A G T C T A G A C T G G A C T G C A T C G T A T A C G A G T C G A T C A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

PITX3/MA0714.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:KKGBTTAGCC
GGGATTANN-
 A C G T C A G T C T A G A C T G G A C T G C A T C G T A T A C G A G T C G A T C
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-KKGBTTAGCC
NGGGATTA---
 A C G T A C G T C A G T C T A G A C T G G A C T G C A T C G T A T A C G A G T C G A T C
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-KKGBTTAGCC
VRGGATTARN-
 A C G T A C G T C A G T C T A G A C T G G A C T G C A T C G T A T A C G A G T C G A T C
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---KKGBTTAGCC---
AGGGGGATTAGCTGCC
 A C G T A C G T A C G T A C G T C A G T C T A G A C T G G A C T G C A T C G T A T A C G A G T C G A T C A C G T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:KKGBTTAGCC
RGGATTAR--
 A C G T C A G T C T A G A C T G G A C T G C A T C G T A T A C G A G T C G A T C
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T

FOXD1/MA0031.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:KKGBTTAGCC
ATGTTTAC--
 A C G T C A G T C T A G A C T G G A C T G C A T C G T A T A C G A G T C G A T C
G C T A A C G T C A T G A C G T A C G T A C G T C G T A A G T C A C G T A C G T

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--KKGBTTAGCC
NYYTGTTTACHN
 A C G T A C G T A C G T C A G T C T A G A C T G G A C T G C A T C G T A T A C G A G T C G A T C
A G C T A G T C A G T C A C G T C T A G A C G T A C G T A C G T C G T A A G T C G A T C C G T A

RHOXF1/MA0719.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:KKGBTTAGCC
NGGATTAN--
 A C G T C A G T C T A G A C T G G A C T G C A T C G T A T A C G A G T C G A T C
C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T