Information for 15-AGTTTATGGGCCTTNC (Motif 18)

C T G A T A C G A G C T A G C T A C G T C G T A A C G T C A T G C A T G A C T G G T A C A G T C A C G T A C G T A T C G A G T C
Reverse Opposite:
C T A G A T G C C G T A C G T A C T A G C A T G G T A C G A T C G A T C C G T A G C A T G T C A C T G A C T G A A T G C A G C T
p-value:1e-11
log p-value:-2.568e+01
Information Content per bp:1.721
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.6 +/- 24.5bp
Average Position of motif in Background61.2 +/- 11.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0013.1_Cdx2/Jaspar

Match Rank:1
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGTTTATGGGCCTTNC
NAATTTTATTACCNNN--
 A C G T A C G T C T G A T A C G A G C T A G C T A C G T C G T A A C G T C A T G C A T G A C T G G T A C A G T C A C G T A C G T A T C G A G T C
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGTTTATGGGCCTTNC
NTTTTATTGG------
 C T G A T A C G A G C T A G C T A C G T C G T A A C G T C A T G C A T G A C T G G T A C A G T C A C G T A C G T A T C G A G T C
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AGTTTATGGGCCTTNC
TTTTTATTGG------
 C T G A T A C G A G C T A G C T A C G T C G T A A C G T C A T G C A T G A C T G G T A C A G T C A C G T A C G T A T C G A G T C
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGTTTATGGGCCTTNC
-TTTTATKRGG-----
 C T G A T A C G A G C T A G C T A C G T C G T A A C G T C A T G C A T G A C T G G T A C A G T C A C G T A C G T A T C G A G T C
A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AGTTTATGGGCCTTNC
NTNAATTTTATTGNATT---
 A C G T A C G T A C G T A C G T C T G A T A C G A G C T A G C T A C G T C G T A A C G T C A T G C A T G A C T G G T A C A G T C A C G T A C G T A T C G A G T C
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGTTTATGGGCCTTNC
NNNNTTGTGTGCTTNN-
 A C G T C T G A T A C G A G C T A G C T A C G T C G T A A C G T C A T G C A T G A C T G G T A C A G T C A C G T A C G T A T C G A G T C
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AGTTTATGGGCCTTNC
NNAATTTTATTGGNTN---
 A C G T A C G T A C G T C T G A T A C G A G C T A G C T A C G T C G T A A C G T C A T G C A T G A C T G G T A C A G T C A C G T A C G T A T C G A G T C
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGTTTATGGGCCTTNC
NTTTTATTGG------
 C T G A T A C G A G C T A G C T A C G T C G T A A C G T C A T G C A T G A C T G G T A C A G T C A C G T A C G T A T C G A G T C
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGTTTATGGGCCTTNC
-TTTTATTRGN-----
 C T G A T A C G A G C T A G C T A C G T C G T A A C G T C A T G C A T G A C T G G T A C A G T C A C G T A C G T A T C G A G T C
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGTTTATGGGCCTTNC
DGWTTTATGRCN-----
 A C G T C T G A T A C G A G C T A G C T A C G T C G T A A C G T C A T G C A T G A C T G G T A C A G T C A C G T A C G T A T C G A G T C
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T A C G T A C G T A C G T