Information for 12-RTGWTTATGGCAT (Motif 14)

C T G A A C G T A C T G C G T A C G A T A C G T C G T A A C G T A C T G C T A G A G T C G T C A A C G T
Reverse Opposite:
C G T A A C G T C T A G A G T C G T A C C G T A A C G T C G T A C G T A C G A T G T A C C G T A A G C T
p-value:1e-11
log p-value:-2.685e+01
Information Content per bp:1.826
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif14.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets62.3 +/- 20.9bp
Average Position of motif in Background48.9 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:RTGWTTATGGCAT
--TTTTATGGCTN
 C T G A A C G T A C T G C G T A C G A T A C G T C G T A A C G T A C T G C T A G A G T C G T C A A C G T
A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:RTGWTTATGGCAT
--TTTTATTGC--
 C T G A A C G T A C T G C G T A C G A T A C G T C G T A A C G T A C T G C T A G A G T C G T C A A C G T
A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T

ZNF410/MA0752.1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-RTGWTTATGGCAT---
GANTATTATGGGATGGA
 A C G T C T G A A C G T A C T G C G T A C G A T A C G T C G T A A C G T A C T G C T A G A G T C G T C A A C G T A C G T A C G T A C G T
C A T G T C G A C A T G G A C T C T G A A G C T A C G T C T G A C A G T A T C G A C T G C A T G G T C A C G A T C T A G A C T G T G C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:RTGWTTATGGCAT
-NTTTTATGAC--
 C T G A A C G T A C T G C G T A C G A T A C G T C G T A A C G T A C T G C T A G A G T C G T C A A C G T
A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:RTGWTTATGGCAT
-NTTTTATTACN-
 C T G A A C G T A C T G C G T A C G A T A C G T C G T A A C G T A C T G C T A G A G T C G T C A A C G T
A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-RTGWTTATGGCAT--
NAATTTTATTACCNNN
 A C G T C T G A A C G T A C T G C G T A C G A T A C G T C G T A A C G T A C T G C T A G A G T C G T C A A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

FOXL1/MA0033.2/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:RTGWTTATGGCAT
-TGTTTAC-----
 C T G A A C G T A C T G C G T A C G A T A C G T C G T A A C G T A C T G C T A G A G T C G T C A A C G T
A C G T C A G T C T A G A C G T C A G T A C G T C T G A G A T C A C G T A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--RTGWTTATGGCAT-
NGANTTTTATGGCTCN
 A C G T A C G T C T G A A C G T A C T G C G T A C G A T A C G T C G T A A C G T A C T G C T A G A G T C G T C A A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

FOXG1/MA0613.1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:RTGWTTATGGCAT
TTGTTTAC-----
 C T G A A C G T A C T G C G T A C G A T A C G T C G T A A C G T A C T G C T A G A G T C G T C A A C G T
C G A T A C G T A C T G A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---RTGWTTATGGCAT-
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T C T G A A C G T A C T G C G T A C G A T A C G T C G T A A C G T A C T G C T A G A G T C G T C A A C G T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T