Information for 3-CAGCGGAGAG (Motif 9)

G T A C C G T A A C T G G A T C A T C G T A C G C G T A T A C G G C T A T C A G
Reverse Opposite:
A G T C C G A T A T G C C G A T A T G C T A G C C T A G T G A C G C A T A C T G
p-value:1e-9
log p-value:-2.097e+01
Information Content per bp:1.682
Number of Target Sequences with motif109.0
Percentage of Target Sequences with motif11.23%
Number of Background Sequences with motif2940.5
Percentage of Background Sequences with motif6.06%
Average Position of motif in Targets49.7 +/- 27.5bp
Average Position of motif in Background49.5 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CAGCGGAGAG
HCAGCTGDTN-
 A C G T G T A C C G T A A C T G G A T C A T C G T A C G C G T A T A C G G C T A T C A G
G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CAGCGGAGAG--
NCGCAGCGGGGGGTC
 A C G T A C G T A C G T G T A C C G T A A C T G G A T C A T C G T A C G C G T A T A C G G C T A T C A G A C G T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC1/MA0696.1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CAGCGGAGAG--
CACAGCGGGGGGTC
 A C G T A C G T G T A C C G T A A C T G G A T C A T C G T A C G C G T A T A C G G C T A T C A G A C G T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAGCGGAGAG
CAGCC-----
 G T A C C G T A A C T G G A T C A T C G T A C G C G T A T A C G G C T A T C A G
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAGCGGAGAG
ANCAGCTG----
 A C G T A C G T G T A C C G T A A C T G G A T C A T C G T A C G C G T A T A C G G C T A T C A G
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAGCGGAGAG
AACAGCTG----
 A C G T A C G T G T A C C G T A A C T G G A T C A T C G T A C G C G T A T A C G G C T A T C A G
T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CAGCGGAGAG--
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T G T A C C G T A A C T G G A T C A T C G T A C G C G T A T A C G G C T A T C A G A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CAGCGGAGAG
CACAGCAGGGGG
 A C G T A C G T G T A C C G T A A C T G G A T C A T C G T A C G C G T A T A C G G C T A T C A G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

NHLH1/MA0048.2/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CAGCGGAGAG
CGCAGCTGCG--
 A C G T A C G T G T A C C G T A A C T G G A T C A T C G T A C G C G T A T A C G G C T A T C A G
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CAGCGGAGAG--
NCNCAGCGGGGGGTC
 A C G T A C G T A C G T G T A C C G T A A C T G G A T C A T C G T A C G C G T A T A C G G C T A T C A G A C G T A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C