Information for 7-GAAGGGCGAATGGCCC (Motif 15)

A T C G C G T A C G T A A C T G A C T G A C T G A T G C A C T G G T C A T C G A A G C T A T C G A C T G A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G A G T C A T G C C T G A A C G T A C G T A G T C A T C G A G T C A G T C A G T C A C G T A C G T A T G C
p-value:1e-6
log p-value:-1.448e+01
Information Content per bp:1.922
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.4 +/- 24.4bp
Average Position of motif in Background57.5 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:1
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GAAGGGCGAATGGCCC
---GGGGGAATCCCC-
 A T C G C G T A C G T A A C T G A C T G A C T G A T G C A C T G G T C A T C G A A G C T A T C G A C T G A G T C A G T C A G T C
A C G T A C G T A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T

PB0143.1_Klf7_2/Jaspar

Match Rank:2
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GAAGGGCGAATGGCCC
NNNTNGGGCGTATNNTN-
 A C G T A C G T A T C G C G T A C G T A A C T G A C T G A C T G A T G C A C T G G T C A T C G A A G C T A T C G A C T G A G T C A G T C A G T C
G T C A C G T A A C T G G C A T C A G T C T A G A C T G A C T G G A T C C T A G A C G T G C T A G C A T T C A G G A T C A G C T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:3
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GAAGGGCGAATGGCCC
--NAGGTCANTGACCT
 A T C G C G T A C G T A A C T G A C T G A C T G A T G C A C T G G T C A T C G A A G C T A T C G A C T G A G T C A G T C A G T C
A C G T A C G T T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

PB0137.1_Irf3_2/Jaspar

Match Rank:4
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GAAGGGCGAATGGCCC--
----GGAGAAAGGTGCGA
 A T C G C G T A C G T A A C T G A C T G A C T G A T G C A C T G G T C A T C G A A G C T A T C G A C T G A G T C A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

KLF14/MA0740.1/Jaspar

Match Rank:5
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GAAGGGCGAATGGCCC
-AAGGGGGCGTGGCC-
 A T C G C G T A C G T A A C T G A C T G A C T G A T G C A C T G G T C A T C G A A G C T A T C G A C T G A G T C A G T C A G T C
A C G T C T G A C T G A C T A G C A T G T C A G T C A G A T C G A G T C C A T G A C G T T C A G C A T G A G T C G T A C A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:6
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GAAGGGCGAATGGCCC
GGAGGGGGAA------
 A T C G C G T A C G T A A C T G A C T G A C T G A T G C A C T G G T C A T C G A A G C T A T C G A C T G A G T C A G T C A G T C
A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

SP4/MA0685.1/Jaspar

Match Rank:7
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GAAGGGCGAATGGCCC-
NAAGGGGGCGTGGCTTN
 A T C G C G T A C G T A A C T G A C T G A C T G A T G C A C T G G T C A T C G A A G C T A T C G A C T G A G T C A G T C A G T C A C G T
C T G A C T G A C G T A C T A G C A T G T C A G A C T G A T C G T G A C A C T G A C G T T C A G C A T G G A T C G A C T C G A T T C G A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:GAAGGGCGAATGGCCC
-----GTTAATGGCC-
 A T C G C G T A C G T A A C T G A C T G A C T G A T G C A C T G G T C A T C G A A G C T A T C G A C T G A G T C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:9
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:GAAGGGCGAATGGCCC
---AGGGGAATCCCCT
 A T C G C G T A C G T A A C T G A C T G A C T G A T G C A C T G G T C A T C G A A G C T A T C G A C T G A G T C A G T C A G T C
A C G T A C G T A C G T T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer

Match Rank:10
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:GAAGGGCGAATGGCCC
--RGTGGGYGTGGC--
 A T C G C G T A C G T A A C T G A C T G A C T G A T G C A C T G G T C A T C G A A G C T A T C G A C T G A G T C A G T C A G T C
A C G T A C G T C T G A T C A G C A G T C T A G A T C G A C T G G A T C C A T G A C G T C A T G A C T G A G T C A C G T A C G T