Information for 1-SCCMGGRARAGGCCAG (Motif 1)

A T G C A G T C A G T C G T C A C T A G A C T G C T G A C G T A C T A G C G T A A C T G A C T G A G T C G T A C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C T G A G T C A G T C A C G T A G T C A C G T A G C T A G T C A G T C A C G T A C T G A C T G A T C G
p-value:1e-13
log p-value:-3.008e+01
Information Content per bp:1.896
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.2 +/- 25.4bp
Average Position of motif in Background27.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:SCCMGGRARAGGCCAG
---ANGNAAAGGTCA-
 A T G C A G T C A G T C G T C A C T A G A C T G C T G A C G T A C T A G C G T A A C T G A C T G A G T C G T A C C G T A A C T G
A C G T A C G T A C G T C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.58
Offset:6
Orientation:forward strand
Alignment:SCCMGGRARAGGCCAG
------CAAAGGTCAG
 A T G C A G T C A G T C G T C A C T A G A C T G C T G A C G T A C T A G C G T A A C T G A C T G A G T C G T A C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:SCCMGGRARAGGCCAG
-TAGGGCAAAGGTCA-
 A T G C A G T C A G T C G T C A C T A G A C T G C T G A C G T A C T A G C G T A A C T G A C T G A G T C G T A C C G T A A C T G
A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.56
Offset:8
Orientation:forward strand
Alignment:SCCMGGRARAGGCCAG---
--------AAGGCAAGTGT
 A T G C A G T C A G T C G T C A C T A G A C T G C T G A C G T A C T A G C G T A A C T G A C T G A G T C G T A C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:SCCMGGRARAGGCCAG
GTAGGGCAAAGGTCA-
 A T G C A G T C A G T C G T C A C T A G A C T G C T G A C G T A C T A G C G T A A C T G A C T G A G T C G T A C C G T A A C T G
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

Gabpa/MA0062.2/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:SCCMGGRARAGGCCAG
--CCGGAAGTGGC---
 A T G C A G T C A G T C G T C A C T A G A C T G C T G A C G T A C T A G C G T A A C T G A C T G A G T C G T A C C G T A A C T G
A C G T A C G T T A G C T G A C A C T G A C T G T C G A G C T A T C A G G A C T T C A G T C A G T G A C A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.56
Offset:7
Orientation:forward strand
Alignment:SCCMGGRARAGGCCAG
-------TRAGGTCA-
 A T G C A G T C A G T C G T C A C T A G A C T G C T G A C G T A C T A G C G T A A C T G A C T G A G T C G T A C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

ELK4/MA0076.2/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:SCCMGGRARAGGCCAG
-NCCGGAAGTGG----
 A T G C A G T C A G T C G T C A C T A G A C T G C T G A C G T A C T A G C G T A A C T G A C T G A G T C G T A C C G T A A C T G
A C G T T C A G T A G C G T A C A C T G A C T G C G T A C G T A T C A G G A C T T A C G T A C G A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:SCCMGGRARAGGCCAG
-CCAGGAACAG-----
 A T G C A G T C A G T C G T C A C T A G A C T G C T G A C G T A C T A G C G T A A C T G A C T G A G T C G T A C C G T A A C T G
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--SCCMGGRARAGGCCAG
RGGTCADNNAGAGGTCAV
 A C G T A C G T A T G C A G T C A G T C G T C A C T A G A C T G C T G A C G T A C T A G C G T A A C T G A C T G A G T C G T A C C G T A A C T G
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C