Information for 3-VGGAGCGAGTCCA (Motif 4)

T A G C A C T G A C T G C G T A C T A G A T G C A C T G C G T A A C T G C G A T A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G G C T A A G T C A C G T G T A C A T C G A G T C A C G T A G T C A G T C A T C G
p-value:1e-10
log p-value:-2.488e+01
Information Content per bp:1.847
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets35.4 +/- 21.7bp
Average Position of motif in Background62.9 +/- 20.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:VGGAGCGAGTCCA
CGGAGC-------
 T A G C A C T G A C T G C G T A C T A G A T G C A C T G C G T A A C T G C G A T A G T C A G T C C G T A
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:VGGAGCGAGTCCA----
-GGCAAAAGTCCAATAA
 T A G C A C T G A C T G C G T A C T A G A T G C A C T G C G T A A C T G C G A T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:VGGAGCGAGTCCA---
-TGACANARRCCAGRC
 T A G C A C T G A C T G C G T A C T A G A T G C A C T G C G T A A C T G C G A T A G T C A G T C C G T A A C G T A C G T A C G T
A C G T C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

Hnf4a/MA0114.3/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-VGGAGCGAGTCCA--
GGGGTCAAAGTCCAAT
 A C G T T A G C A C T G A C T G C G T A C T A G A T G C A C T G C G T A A C T G C G A T A G T C A G T C C G T A A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

PB0036.1_Irf6_1/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:VGGAGCGAGTCCA----
CTGATCGAAACCAAAGT
 T A G C A C T G A C T G C G T A C T A G A T G C A C T G C G T A A C T G C G A T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
G T A C C G A T C A T G C T G A G A C T G A T C C T A G T C G A C G T A C G T A T A G C A G T C T C G A T G C A C G T A C A T G C G A T

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:VGGAGCGAGTCCA----
GGGRAARRGRMCAGMTG
 T A G C A C T G A C T G C G T A C T A G A T G C A C T G C G T A A C T G C G A T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
C A T G A C T G C T A G T C G A T C G A T C G A T C G A T C A G T C A G T C A G T G A C T G A C C G T A A C T G T G C A C G A T A C T G

PB0203.1_Zfp691_2/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-VGGAGCGAGTCCA---
NTNNNAGGAGTCTCNTN
 A C G T T A G C A C T G A C T G C G T A C T A G A T G C A C T G C G T A A C T G C G A T A G T C A G T C C G T A A C G T A C G T A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:VGGAGCGAGTCCA
AGGTGNCAGACAG
 T A G C A C T G A C T G C G T A C T A G A T G C A C T G C G T A A C T G C G A T A G T C A G T C C G T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:VGGAGCGAGTCCA
AGGTGHCAGACA-
 T A G C A C T G A C T G C G T A C T A G A T G C A C T G C G T A A C T G C G A T A G T C A G T C C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:forward strand
Alignment:VGGAGCGAGTCCA
---AAYTAGGTCA
 T A G C A C T G A C T G C G T A C T A G A T G C A C T G C G T A A C T G C G A T A G T C A G T C C G T A
A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A