Information for 1-CTGGCATCCC (Motif 3)

A T G C G C A T T C A G A C T G T A G C G T C A A C G T A T G C A G T C T G A C
Reverse Opposite:
A C T G C T A G T A C G T G C A C A G T A T C G G T A C A G T C C G T A T A C G
p-value:1e-10
log p-value:-2.495e+01
Information Content per bp:1.683
Number of Target Sequences with motif135.0
Percentage of Target Sequences with motif14.17%
Number of Background Sequences with motif3769.6
Percentage of Background Sequences with motif7.76%
Average Position of motif in Targets47.1 +/- 24.4bp
Average Position of motif in Background50.4 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCATCCC
GGTTGGCAT---
 A C G T A C G T A T G C G C A T T C A G A C T G T A G C G T C A A C G T A T G C A G T C T G A C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CTGGCATCCC
GGTCTGGCAT---
 A C G T A C G T A C G T A T G C G C A T T C A G A C T G T A G C G T C A A C G T A T G C A G T C T G A C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCATCCC
NTTGGCANN--
 A C G T A T G C G C A T T C A G A C T G T A G C G T C A A C G T A T G C A G T C T G A C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTGGCATCCC
CCWGGAATGY-
 A C G T A T G C G C A T T C A G A C T G T A G C G T C A A C G T A T G C A G T C T G A C
T A G C T A G C G C A T C A T G A C T G G C T A C G T A A C G T A C T G G A T C A C G T

HIC2/MA0738.1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCATCCC
NGTGGGCAT---
 A C G T A C G T A T G C G C A T T C A G A C T G T A G C G T C A A C G T A T G C A G T C T G A C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTGGCATCCC
TTGGCA----
 A T G C G C A T T C A G A C T G T A G C G T C A A C G T A T G C A G T C T G A C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------CTGGCATCCC
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C G C A T T C A G A C T G T A G C G T C A A C G T A T G C A G T C T G A C
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

TEAD3/MA0808.1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CTGGCATCCC-
---ACATTCCA
 A T G C G C A T T C A G A C T G T A G C G T C A A C G T A T G C A G T C T G A C A C G T
A C G T A C G T A C G T C T G A T G A C C G T A A C G T C G A T A G T C A G T C C G T A

PB0098.1_Zfp410_1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCATCCC------
NNNTCCATCCCATAANN
 A C G T A T G C G C A T T C A G A C T G T A G C G T C A A C G T A T G C A G T C T G A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCATCCC
CTTGGCAA---
 A C G T A T G C G C A T T C A G A C T G T A G C G T C A A C G T A T G C A G T C T G A C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T