Information for 3-GATGCGAGGA (Motif 9)

A C T G T G C A G A C T A C T G A G T C A C T G T G C A A C T G A C T G C T G A
Reverse Opposite:
A G C T A G T C A G T C A C G T G T A C C T A G A G T C C G T A A C G T A G T C
p-value:1e-8
log p-value:-1.945e+01
Information Content per bp:1.858
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif30.3
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets38.2 +/- 25.0bp
Average Position of motif in Background46.8 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GATGCGAGGA----
KGTTGCTAGGMAACA
 A C G T A C T G T G C A G A C T A C T G A G T C A C T G T G C A A C T G A C T G C T G A A C G T A C G T A C G T A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GATGCGAGGA
CTGTTGCTAGGS
 A C G T A C G T A C T G T G C A G A C T A C T G A G T C A C T G T G C A A C T G A C T G C T G A
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

GCM2/MA0767.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GATGCGAGGA
TATGCGGGTA
 A C T G T G C A G A C T A C T G A G T C A C T G T G C A A C T G A C T G C T G A
A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GATGCGAGGA--
NNCGTTGCTATGGNN
 A C G T A C G T A C G T A C T G T G C A G A C T A C T G A G T C A C T G T G C A A C T G A C T G C T G A A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0024.1_Gcm1_1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GATGCGAGGA---
NNNNATGCGGGTNNNN
 A C G T A C G T A C G T A C T G T G C A G A C T A C T G A G T C A C T G T G C A A C T G A C T G C T G A A C G T A C G T A C G T
G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A

PB0054.1_Rfx3_1/Jaspar

Match Rank:6
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------GATGCGAGGA------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G T G C A G A C T A C T G A G T C A C T G T G C A A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

GCM1/MA0646.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GATGCGAGGA-
CATGCGGGTAC
 A C T G T G C A G A C T A C T G A G T C A C T G T G C A A C T G A C T G C T G A A C G T
A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C

EGR3/MA0732.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GATGCGAGGA-----
ANTGCGTGGGCGTNN
 A C T G T G C A G A C T A C T G A G T C A C T G T G C A A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T
C G T A C T A G G A C T C T A G A G T C T A C G A C G T T C A G C T A G A T C G G A T C C T A G C A G T C T G A C T A G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GATGCGAGGA--
NCCGTTGCTANGNGN
 A C G T A C G T A C G T A C T G T G C A G A C T A C T G A G T C A C T G T G C A A C T G A C T G C T G A A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GATGCGAGGA--
--TGCGTGGGYG
 A C T G T G C A G A C T A C T G A G T C A C T G T G C A A C T G A C T G C T G A A C G T A C G T
A C G T A C G T C A G T T C A G G A T C A C T G A C G T C T A G A C T G A C T G G A C T C T A G