Information for 17-CTAATAGRAT (Motif 43)

A T G C G C A T T G C A C G T A C G A T C G T A A T C G T C A G T C G A A C G T
Reverse Opposite:
C G T A A G C T A G T C A T G C A C G T C G T A C G A T A C G T C G T A A T C G
p-value:1e-4
log p-value:-9.522e+00
Information Content per bp:1.773
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.73%
Number of Background Sequences with motif147.4
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets58.2 +/- 25.7bp
Average Position of motif in Background48.8 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0181.1_Spdef_2/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CTAATAGRAT------
CTACTAGGATGTNNTN
 A T G C G C A T T G C A C G T A C G A T C G T A A T C G T C A G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CTAATAGRAT--
YTAATYNRATTA
 A T G C G C A T T G C A C G T A C G A T C G T A A T C G T C A G T C G A A C G T A C G T A C G T
G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CTAATAGRAT--
NTAATBNAATTA
 A T G C G C A T T G C A C G T A C G A T C G T A A T C G T C A G T C G A A C G T A C G T A C G T
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A

PB0135.1_Hoxa3_2/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CTAATAGRAT--
CCTTAATNGNTTTT
 A C G T A C G T A T G C G C A T T G C A C G T A C G A T C G T A A T C G T C A G T C G A A C G T A C G T A C G T
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CTAATAGRAT
CCAAAAATAG---
 A C G T A C G T A C G T A T G C G C A T T G C A C G T A C G A T C G T A A T C G T C A G T C G A A C G T
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T

Phox2b/MA0681.1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTAATAGRAT--
-TAATTAAATTA
 A T G C G C A T T G C A C G T A C G A T C G T A A T C G T C A G T C G A A C G T A C G T A C G T
A C G T G C A T C G T A C T G A A G C T A G C T C T G A T C G A C T G A A G C T G A C T C G T A

PHOX2A/MA0713.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTAATAGRAT--
-TAATTAAATTA
 A T G C G C A T T G C A C G T A C G A T C G T A A T C G T C A G T C G A A C G T A C G T A C G T
A C G T G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTAATAGRAT--
GTAATCDGATTA
 A T G C G C A T T G C A C G T A C G A T C G T A A T C G T C A G T C G A A C G T A C G T A C G T
C A T G C G A T T C G A C T G A G C A T A G T C C A T G T C A G C T G A A C G T G A C T C G T A

BARX1/MA0875.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTAATAGRAT
NTAATTGN--
 A T G C G C A T T G C A C G T A C G A T C G T A A T C G T C A G T C G A A C G T
A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTAATAGRAT
CTAATKGV--
 A T G C G C A T T G C A C G T A C G A T C G T A A T C G T C A G T C G A A C G T
A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T