Information for 20-KGTSCTGGRGTYC (Motif 39)

A C T G A C T G A C G T A T C G A G T C A C G T A C T G C T A G C T A G A C T G A C G T A G T C A G T C
Reverse Opposite:
A C T G C T A G C G T A A G T C A G T C A G T C A G T C C G T A A C T G A T G C C G T A A G T C G T A C
p-value:1e-5
log p-value:-1.309e+01
Information Content per bp:1.872
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.0 +/- 24.6bp
Average Position of motif in Background63.1 +/- 16.5bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXRA::VDR/MA0074.1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-KGTSCTGGRGTYC-
GGGTCAACGAGTTCA
 A C G T A C T G A C T G A C G T A T C G A G T C A C G T A C T G C T A G C T A G A C T G A C G T A G T C A G T C A C G T
C T A G A C T G A C T G A C G T A G T C C T G A G C A T A G T C C T A G C T A G A C T G A C G T C G A T A G T C T C G A

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:KGTSCTGGRGTYC
GRTGMTRGAGCC-
 A C T G A C T G A C G T A T C G A G T C A C G T A C T G C T A G C T A G A C T G A C G T A G T C A G T C
A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.55
Offset:3
Orientation:forward strand
Alignment:KGTSCTGGRGTYC
---GCTGTGGTTT
 A C T G A C T G A C G T A T C G A G T C A C G T A C T G C T A G C T A G A C T G A C G T A G T C A G T C
A C G T A C G T A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---KGTSCTGGRGTYC----
NGAGGTCANNGAGTTCANNN
 A C G T A C G T A C G T A C T G A C T G A C G T A T C G A G T C A C G T A C T G C T A G C T A G A C T G A C G T A G T C A G T C A C G T A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---KGTSCTGGRGTYC
BCNGGTTCTAGANCN-
 A C G T A C G T A C G T A C T G A C T G A C G T A T C G A G T C A C G T A C T G C T A G C T A G A C T G A C G T A G T C A G T C
A G C T T G A C C T A G C A T G C T A G G A C T A C G T A G T C A G C T C T G A T A C G T C G A C G A T A G T C G A C T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:KGTSCTGGRGTYC-
----CTGTGGTTTN
 A C T G A C T G A C G T A T C G A G T C A C G T A C T G C T A G C T A G A C T G A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G

RUNX1/MA0002.2/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:KGTSCTGGRGTYC
--GTCTGTGGTTT
 A C T G A C T G A C G T A T C G A G T C A C G T A C T G C T A G C T A G A C T G A C G T A G T C A G T C
A C G T A C G T A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-KGTSCTGGRGTYC
NTGCCCANNGGTNA
 A C G T A C T G A C T G A C G T A T C G A G T C A C G T A C T G C T A G C T A G A C T G A C G T A G T C A G T C
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-KGTSCTGGRGTYC
CTGTTCCTGG----
 A C G T A C T G A C T G A C G T A T C G A G T C A C G T A C T G C T A G C T A G A C T G A C G T A G T C A G T C
T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.51
Offset:3
Orientation:forward strand
Alignment:KGTSCTGGRGTYC
---GCTGTG----
 A C T G A C T G A C G T A T C G A G T C A C G T A C T G C T A G C T A G A C T G A C G T A G T C A G T C
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T