Information for 18-SAKGAATATTCWM (Motif 35)

A T C G C T G A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A T G C C G A T G T C A
Reverse Opposite:
A C G T C G T A A T C G C G T A C G T A A C G T C G T A A C G T A C G T A G T C G T A C A G C T A T G C
p-value:1e-6
log p-value:-1.516e+01
Information Content per bp:1.874
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.0 +/- 27.0bp
Average Position of motif in Background29.4 +/- 4.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.83
Offset:1
Orientation:forward strand
Alignment:SAKGAATATTCWM
-ATGAATATTC--
 A T C G C T G A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A T G C C G A T G T C A
A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--SAKGAATATTCWM
CTCATGAATATTCAT
 A C G T A C G T A T C G C T G A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A T G C C G A T G T C A
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.77
Offset:1
Orientation:forward strand
Alignment:SAKGAATATTCWM
-ATGMATATDC--
 A T C G C T G A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A T G C C G A T G T C A
A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T

HSF1/MA0486.2/Jaspar

Match Rank:4
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:SAKGAATATTCWM---
---GAACGTTCTAGAA
 A T C G C T G A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A T G C C G A T G T C A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G G C T A C G T A A G T C T C A G C G A T C A G T A G T C A C G T T C G A A C T G G T C A G C T A

HSF4/MA0771.1/Jaspar

Match Rank:5
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:SAKGAATATTCWM---
---GAANNTTCTAGAA
 A T C G C T G A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A T G C C G A T G T C A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G G C T A G C T A A G T C T C A G C G A T C G A T T A G C A G C T T C G A A T C G G T C A G C T A

HSF2/MA0770.1/Jaspar

Match Rank:6
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:SAKGAATATTCWM---
---GAANGTTCTAGAA
 A T C G C T G A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A T G C C G A T G T C A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C T G A G C T A G A T C T C A G G C A T C A G T G A T C A G C T T C G A A C T G G T C A G C T A

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----SAKGAATATTCWM---
NNTTCTGGAANNTTCTAGAA
 A C G T A C G T A C G T A C G T A T C G C T G A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A T G C C G A T G T C A A C G T A C G T A C G T
A T G C T A G C A G C T A G C T T G A C G A C T T C A G T A C G G T C A C T G A A T C G T A G C G A C T C A G T A G T C A G C T T C G A A T C G T G C A T G C A

PB0178.1_Sox8_2/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----SAKGAATATTCWM
NNTNTCATGAATGT----
 A C G T A C G T A C G T A C G T A C G T A T C G C T G A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A T G C C G A T G T C A
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--SAKGAATATTCWM
NNTNNCAATATTAG-
 A C G T A C G T A T C G C T G A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A T G C C G A T G T C A
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--SAKGAATATTCWM
NNTNNCAATATTAG-
 A C G T A C G T A T C G C T G A A C T G A C T G C G T A C G T A A C G T C G T A A C G T A C G T A T G C C G A T G T C A
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T