Information for 13-GTBCCTCAGGTCCCTG (Motif 20)

A C T G A C G T A C G T T G A C A G T C A C G T A T G C C G T A A C T G A C T G A C G T A G T C G T A C G T A C G A C T A C T G
Reverse Opposite:
A G T C C T G A A C T G A C T G C T A G C G T A A G T C A G T C A C G T A T C G C G T A C T A G A C T G T C G A G T C A A G T C
p-value:1e-10
log p-value:-2.361e+01
Information Content per bp:1.791
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.7 +/- 27.9bp
Average Position of motif in Background39.5 +/- 20.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GTBCCTCAGGTCCCTG
-----TRAGGTCA---
 A C T G A C G T A C G T T G A C A G T C A C G T A T G C C G T A A C T G A C T G A C G T A G T C G T A C G T A C G A C T A C T G
A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.57
Offset:7
Orientation:forward strand
Alignment:GTBCCTCAGGTCCCTG
-------AGGTCA---
 A C T G A C G T A C G T T G A C A G T C A C G T A T G C C G T A A C T G A C T G A C G T A G T C G T A C G T A C G A C T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GTBCCTCAGGTCCCTG
--GCCTCAGGGCAT--
 A C T G A C G T A C G T T G A C A G T C A C G T A T G C C G T A A C T G A C T G A C G T A G T C G T A C G T A C G A C T A C T G
A C G T A C G T A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GTBCCTCAGGTCCCTG
------AAGGTCAC--
 A C T G A C G T A C G T T G A C A G T C A C G T A T G C C G T A A C T G A C T G A C G T A G T C G T A C G T A C G A C T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GTBCCTCAGGTCCCTG
--SCCTSAGGSCAW--
 A C T G A C G T A C G T T G A C A G T C A C G T A T G C C G T A A C T G A C T G A C G T A G T C G T A C G T A C G A C T A C T G
A C G T A C G T A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:6
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GTBCCTCAGGTCCCTG----
------NAGGTCANTGACCT
 A C T G A C G T A C G T T G A C A G T C A C G T A T G C C G T A A C T G A C T G A C G T A G T C G T A C G T A C G A C T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:7
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GTBCCTCAGGTCCCTG
-----VCAGGTRDRY-
 A C T G A C G T A C G T T G A C A G T C A C G T A T G C C G T A A C T G A C T G A C G T A G T C G T A C G T A C G A C T A C T G
A C G T A C G T A C G T A C G T A C G T T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GTBCCTCAGGTCCCTG
----AACAGGTGT---
 A C T G A C G T A C G T T G A C A G T C A C G T A T G C C G T A A C T G A C T G A C G T A G T C G T A C G T A C G A C T A C T G
A C G T A C G T A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T A C G T A C G T

CRE(bZIP)/Promoter/Homer

Match Rank:9
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GTBCCTCAGGTCCCTG
----GTGACGTCACCG
 A C T G A C G T A C G T T G A C A G T C A C G T A T G C C G T A A C T G A C T G A C G T A G T C G T A C G T A C G A C T A C T G
A C G T A C G T A C G T A C G T T A C G A G C T A T C G C T G A A G T C C T A G A G C T A T G C C T G A A T G C T A G C T A C G

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:GTBCCTCAGGTCCCTG-
----CAAAGGTCAAGGG
 A C T G A C G T A C G T T G A C A G T C A C G T A T G C C G T A A C T G A C T G A C G T A G T C G T A C G T A C G A C T A C T G A C G T
A C G T A C G T A C G T A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G