Information for 12-CCCGCGGGTGCTTTCC (Motif 19)

A G T C A G T C A G T C A C T G A G T C A C T G A C T G A C T G A C G T A C T G A T G C A C G T A C G T A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A C G T A C G T A A T C G A G T C C G T A A G T C A G T C G T A C A C T G G T A C C T A G A C T G A C T G
p-value:1e-10
log p-value:-2.361e+01
Information Content per bp:1.932
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.7 +/- 28.7bp
Average Position of motif in Background36.6 +/- 5.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.61
Offset:6
Orientation:forward strand
Alignment:CCCGCGGGTGCTTTCC
------GGGGATTTCC
 A G T C A G T C A G T C A C T G A G T C A C T G A C T G A C T G A C G T A C T G A T G C A C G T A C G T A C G T A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.61
Offset:6
Orientation:forward strand
Alignment:CCCGCGGGTGCTTTCC
------GGGGATTTCC
 A G T C A G T C A G T C A C T G A G T C A C T G A C T G A C T G A C G T A C T G A T G C A C G T A C G T A C G T A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CCCGCGGGTGCTTTCC
------GGGAATTTCC
 A G T C A G T C A G T C A C T G A G T C A C T G A C T G A C T G A C G T A C T G A T G C A C G T A C G T A C G T A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CCCGCGGGTGCTTTCC-
-----NGGGGATTTCCC
 A G T C A G T C A G T C A C T G A G T C A C T G A C T G A C T G A C G T A C T G A T G C A C G T A C G T A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:CCCGCGGGTGCTTTCC
------GGGAATTTCC
 A G T C A G T C A G T C A C T G A G T C A C T G A C T G A C T G A C G T A C T G A T G C A C G T A C G T A C G T A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCCGCGGGTGCTTTCC
-SDGCAGGTGCNS---
 A G T C A G T C A G T C A C T G A G T C A C T G A C T G A C T G A C G T A C T G A T G C A C G T A C G T A C G T A G T C A G T C
A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCCGCGGGTGCTTTCC
CCCCCCCGGGGGGGT---
 A C G T A C G T A G T C A G T C A G T C A C T G A G T C A C T G A C T G A C T G A C G T A C T G A T G C A C G T A C G T A C G T A G T C A G T C
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T A C G T A C G T A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:8
Score:0.53
Offset:9
Orientation:forward strand
Alignment:CCCGCGGGTGCTTTCC---
---------ATTTTCCATT
 A G T C A G T C A G T C A C T G A G T C A C T G A C T G A C T G A C G T A C T G A T G C A C G T A C G T A C G T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T

PB0103.1_Zic3_1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCCGCGGGTGCTTTCC
CCCCCCCGGGGGGGT---
 A C G T A C G T A G T C A G T C A G T C A C T G A G T C A C T G A C T G A C T G A C G T A C T G A T G C A C G T A C G T A C G T A G T C A G T C
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T A C G T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:CCCGCGGGTGCTTTCC--
--------TGGTTTCAGT
 A G T C A G T C A G T C A C T G A G T C A C T G A C T G A C T G A C G T A C T G A T G C A C G T A C G T A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T