Information for 3-CCTGGATGGCBCTGAA (Motif 5)

A T G C G T A C A C G T A C T G A C T G C G T A A C G T A C T G A T C G G T A C A C T G A T G C A C G T A C T G C T G A C T G A
Reverse Opposite:
A G C T A G C T A G T C G T C A A T C G T A G C A C T G A T G C A G T C C G T A A C G T A G T C A G T C C G T A A C T G A T C G
p-value:1e-9
log p-value:-2.287e+01
Information Content per bp:1.799
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.3 +/- 25.3bp
Average Position of motif in Background41.7 +/- 4.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCTGGATGGCBCTGAA
ATGATKGATGRC------
 A C G T A C G T A T G C G T A C A C G T A C T G A C T G C G T A A C G T A C T G A T C G G T A C A C T G A T G C A C G T A C T G C T G A C T G A
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCTGGATGGCBCTGAA
CGTGGGTGGTCC----
 A T G C G T A C A C G T A C T G A C T G C G T A A C G T A C T G A T C G G T A C A C T G A T G C A C G T A C T G C T G A C T G A
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C A C G T A C G T A C G T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:3
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CCTGGATGGCBCTGAA
-GTGGAT---------
 A T G C G T A C A C G T A C T G A C T G C G T A A C G T A C T G A T C G G T A C A C T G A T G C A C G T A C T G C T G A C T G A
A C G T A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SPDEF/MA0686.1/Jaspar

Match Rank:4
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CCTGGATGGCBCTGAA
ACCCGGATGTA------
 A C G T A T G C G T A C A C G T A C T G A C T G C G T A A C G T A C T G A T C G G T A C A C T G A T G C A C G T A C T G C T G A C T G A
C G T A T G A C T A G C G T A C T A C G C A T G C T G A G C A T T C A G G A C T C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----CCTGGATGGCBCTGAA
NNTNTCATGAATGT-------
 A C G T A C G T A C G T A C G T A C G T A T G C G T A C A C G T A C T G A C T G C G T A A C G T A C T G A T C G G T A C A C T G A T G C A C G T A C T G C T G A C T G A
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CCTGGATGGCBCTGAA
ANCAGGATGT-------
 A C G T A T G C G T A C A C G T A C T G A C T G C G T A A C G T A C T G A T C G G T A C A C T G A T G C A C G T A C T G C T G A C T G A
C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CCTGGATGGCBCTGAA
-GTTAATGGCC-----
 A T G C G T A C A C G T A C T G A C T G C G T A A C G T A C T G A T C G G T A C A C T G A T G C A C G T A C T G C T G A C T G A
A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T A C G T

PB0077.1_Spdef_1/Jaspar

Match Rank:8
Score:0.50
Offset:-5
Orientation:reverse strand
Alignment:-----CCTGGATGGCBCTGAA
AANNATCCGGATGTNN-----
 A C G T A C G T A C G T A C G T A C G T A T G C G T A C A C G T A C T G A C T G C G T A A C G T A C T G A T C G G T A C A C T G A T G C A C G T A C T G C T G A C T G A
T C G A C T G A C T G A C G T A C G T A G A C T T A G C T G A C A C T G A C T G C G T A G C A T T C A G G A C T C T G A A G T C A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.49
Offset:-6
Orientation:forward strand
Alignment:------CCTGGATGGCBCTGAA
GTCATGCHTGRCTGS-------
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T A C A C G T A C T G A C T G C G T A A C G T A C T G A T C G G T A C A C T G A T G C A C G T A C T G C T G A C T G A
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:10
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:CCTGGATGGCBCTGAA
-----ATGACCTTGAA
 A T G C G T A C A C G T A C T G A C T G C G T A A C G T A C T G A T C G G T A C A C T G A T G C A C G T A C T G C T G A C T G A
A C G T A C G T A C G T A C G T A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A