Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-6 | -1.531e+01 | 0.0001 | 116.0 | 14.74% | 3870.6 | 9.11% | motif file (matrix) |
svg |
2 |
| HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer | 1e-5 | -1.296e+01 | 0.0004 | 41.0 | 5.21% | 987.9 | 2.32% | motif file (matrix) |
svg |
3 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-4 | -9.961e+00 | 0.0057 | 154.0 | 19.57% | 6126.7 | 14.42% | motif file (matrix) |
svg |
4 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-3 | -8.884e+00 | 0.0126 | 12.0 | 1.52% | 175.4 | 0.41% | motif file (matrix) |
svg |
5 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-3 | -8.658e+00 | 0.0126 | 16.0 | 2.03% | 295.4 | 0.70% | motif file (matrix) |
svg |
6 |
| Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer | 1e-3 | -8.369e+00 | 0.0141 | 29.0 | 3.68% | 751.9 | 1.77% | motif file (matrix) |
svg |
7 |
| AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer | 1e-3 | -8.263e+00 | 0.0141 | 261.0 | 33.16% | 11678.5 | 27.48% | motif file (matrix) |
svg |
8 |
| PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer | 1e-3 | -7.622e+00 | 0.0223 | 113.0 | 14.36% | 4476.1 | 10.53% | motif file (matrix) |
svg |
9 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-3 | -7.578e+00 | 0.0223 | 15.0 | 1.91% | 294.7 | 0.69% | motif file (matrix) |
svg |
10 |
| HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer | 1e-3 | -7.228e+00 | 0.0264 | 39.0 | 4.96% | 1206.4 | 2.84% | motif file (matrix) |
svg |
11 |
| p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer | 1e-3 | -7.175e+00 | 0.0264 | 28.0 | 3.56% | 772.3 | 1.82% | motif file (matrix) |
svg |
12 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-2 | -6.429e+00 | 0.0490 | 216.0 | 27.45% | 9728.0 | 22.89% | motif file (matrix) |
svg |
13 |
| PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.359e+00 | 0.0490 | 15.0 | 1.91% | 333.3 | 0.78% | motif file (matrix) |
svg |
14 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-2 | -6.244e+00 | 0.0505 | 127.0 | 16.14% | 5335.2 | 12.55% | motif file (matrix) |
svg |
15 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-2 | -6.088e+00 | 0.0551 | 178.0 | 22.62% | 7877.3 | 18.53% | motif file (matrix) |
svg |
16 |
| Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer | 1e-2 | -6.025e+00 | 0.0551 | 18.0 | 2.29% | 452.5 | 1.06% | motif file (matrix) |
svg |
17 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-2 | -5.673e+00 | 0.0736 | 13.0 | 1.65% | 290.0 | 0.68% | motif file (matrix) |
svg |
18 |
| GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.637e+00 | 0.0736 | 4.0 | 0.51% | 33.8 | 0.08% | motif file (matrix) |
svg |
19 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-2 | -5.517e+00 | 0.0770 | 52.0 | 6.61% | 1904.3 | 4.48% | motif file (matrix) |
svg |
20 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-2 | -5.495e+00 | 0.0770 | 55.0 | 6.99% | 2041.1 | 4.80% | motif file (matrix) |
svg |
21 |
| TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer | 1e-2 | -5.461e+00 | 0.0770 | 11.0 | 1.40% | 229.9 | 0.54% | motif file (matrix) |
svg |
22 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-2 | -5.437e+00 | 0.0770 | 9.0 | 1.14% | 166.0 | 0.39% | motif file (matrix) |
svg |
23 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.388e+00 | 0.0770 | 45.0 | 5.72% | 1606.0 | 3.78% | motif file (matrix) |
svg |
24 |
| OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer | 1e-2 | -5.181e+00 | 0.0852 | 5.0 | 0.64% | 60.8 | 0.14% | motif file (matrix) |
svg |
25 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-2 | -5.144e+00 | 0.0852 | 71.0 | 9.02% | 2817.2 | 6.63% | motif file (matrix) |
svg |
26 |
| THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer | 1e-2 | -5.126e+00 | 0.0852 | 227.0 | 28.84% | 10562.9 | 24.85% | motif file (matrix) |
svg |
27 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-2 | -5.068e+00 | 0.0852 | 92.0 | 11.69% | 3823.3 | 9.00% | motif file (matrix) |
svg |
28 |
| RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-2 | -4.968e+00 | 0.0905 | 25.0 | 3.18% | 782.5 | 1.84% | motif file (matrix) |
svg |
29 |
| ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -4.627e+00 | 0.1228 | 40.0 | 5.08% | 1455.3 | 3.42% | motif file (matrix) |
svg |