Information for 6-TCATGCATGCATG (Motif 9)

C A G T A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G
Reverse Opposite:
A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G G T C A
p-value:1e-10
log p-value:-2.476e+01
Information Content per bp:1.466
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.7 +/- 18.7bp
Average Position of motif in Background32.1 +/- 7.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-TCATGCATGCATG-
GTCATGCHTGRCTGS
 A C G T C A G T A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TCATGCATGCATG-
NGTCACGCTTGGCTGC
 A C G T A C G T C A G T A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PAX9/MA0781.1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TCATGCATGCATG--
CGTCACGCATGACTGCA
 A C G T A C G T C A G T A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

PAX1/MA0779.1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TCATGCATGCATG--
CGTCACGCATGACTGCA
 A C G T A C G T C A G T A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

Pax6/MA0069.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TCATGCATGCATG
TTCACGCATGAGTT
 A C G T C A G T A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TCATGCATGCATG
--TTGCGTGCVA-
 C A G T A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G
A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T

PAX5/MA0014.2/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TCATGCATGCATG-----
GTCACGCTTGGCTGCNCNN
 A C G T C A G T A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G A C G T A C G T A C G T A C G T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

PB0170.1_Sox17_2/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TCATGCATGCATG-----
-NTTNTATGAATGTGNNC
 C A G T A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G A C G T A C G T A C G T A C G T A C G T
A C G T G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:9
Score:0.54
Offset:7
Orientation:forward strand
Alignment:TCATGCATGCATG
-------TGCGTG
 C A G T A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G

PH0148.1_Pou3f3/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----TCATGCATGCATG
TNNATTATGCATANNTT
 A C G T A C G T A C G T A C G T C A G T A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G A T G C T G C A A C G T T A C G
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T