Information for 2-GCATGCRCAT (Motif 7)

C A T G G A T C T C G A A G C T T C A G A T G C C T G A A G T C C T G A A G C T
Reverse Opposite:
T C G A G A C T T C A G G A C T T A C G A G T C T C G A A G C T C T A G G T A C
p-value:1e-11
log p-value:-2.743e+01
Information Content per bp:1.561
Number of Target Sequences with motif137.0
Percentage of Target Sequences with motif17.41%
Number of Background Sequences with motif3965.2
Percentage of Background Sequences with motif9.33%
Average Position of motif in Targets51.0 +/- 23.3bp
Average Position of motif in Background49.0 +/- 44.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NRF(NRF)/Promoter/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GCATGCRCAT
GCGCATGCGCAC
 A C G T A C G T C A T G G A T C T C G A A G C T T C A G A T G C C T G A A G T C C T G A A G C T
A C T G A G T C A C T G A G T C C G T A A C G T A C T G A G T C A C T G A G T C C T G A T A G C

NRF1/MA0506.1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GCATGCRCAT
GCGCCTGCGCA-
 A C G T A C G T C A T G G A T C T C G A A G C T T C A G A T G C C T G A A G T C C T G A A G C T
T C A G G T A C T C A G A T G C T G A C A C G T A C T G A G T C A T C G G T A C T C G A A C G T

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GCATGCRCAT
GCGCATGCGCAG
 A C G T A C G T C A T G G A T C T C G A A G C T T C A G A T G C C T G A A G T C C T G A A G C T
T C A G T G A C C T A G T A G C T G C A A C G T T A C G A G T C A C T G A G T C T C G A T A C G

Pou2f3/MA0627.1/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCATGCRCAT----
TTGTATGCAAATTAGA
 A C G T A C G T C A T G G A T C T C G A A G C T T C A G A T G C C T G A A G T C C T G A A G C T A C G T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GCATGCRCAT----
TTGTATGCAAATTAGA
 A C G T A C G T C A T G G A T C T C G A A G C T T C A G A T G C C T G A A G T C C T G A A G C T A C G T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0144.1_Pou2f2/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GCATGCRCAT----
TTGTATGCAAATTAGA
 A C G T A C G T C A T G G A T C T C G A A G C T T C A G A T G C C T G A A G T C C T G A A G C T A C G T A C G T A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

POU2F2/MA0507.1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GCATGCRCAT---
ATATGCAAATNNN
 C A T G G A T C T C G A A G C T T C A G A T G C C T G A A G T C C T G A A G C T A C G T A C G T A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

PB0104.1_Zscan4_1/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GCATGCRCAT---
NTNTATGTGCACATNNN
 A C G T A C G T A C G T A C G T C A T G G A T C T C G A A G C T T C A G A T G C C T G A A G T C C T G A A G C T A C G T A C G T A C G T
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCATGCRCAT
TTATGCAAAT
 C A T G G A T C T C G A A G C T T C A G A T G C C T G A A G T C C T G A A G C T
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

POU3F4/MA0789.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCATGCRCAT
-TATGCAAAT
 C A T G G A T C T C G A A G C T T C A G A T G C C T G A A G T C C T G A A G C T
A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T