Information for 9-TTGGCAAGCG (Motif 19)

A G C T A C G T A C T G A C T G A T G C G T C A C T G A A T C G A T G C C T A G
Reverse Opposite:
A G T C T A C G A T G C A G C T A C G T A T C G A G T C A G T C G T C A C T G A
p-value:1e-9
log p-value:-2.276e+01
Information Content per bp:1.854
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.60%
Number of Background Sequences with motif71.2
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets55.6 +/- 27.0bp
Average Position of motif in Background52.8 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCAAGCG
NNTTGGCANN--
 A C G T A C G T A G C T A C G T A C T G A C T G A T G C G T C A C T G A A T C G A T G C C T A G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCAAGCG
NTTGGCANN--
 A C G T A G C T A C G T A C T G A C T G A T G C G T C A C T G A A T C G A T G C C T A G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCAAGCG
CTTGGCAA---
 A C G T A G C T A C G T A C T G A C T G A T G C G T C A C T G A A T C G A T G C C T A G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.77
Offset:0
Orientation:forward strand
Alignment:TTGGCAAGCG
TTGGCA----
 A G C T A C G T A C T G A C T G A T G C G T C A C T G A A T C G A T G C C T A G
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCAAGCG
GGTTGGCAT---
 A C G T A C G T A G C T A C G T A C T G A C T G A T G C G T C A C T G A A T C G A T G C C T A G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TTGGCAAGCG-
AAGGCAAGTGT
 A G C T A C G T A C T G A C T G A T G C G T C A C T G A A T C G A T G C C T A G A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCAAGCG
NGTGGGCAT---
 A C G T A C G T A G C T A C G T A C T G A C T G A T G C G T C A C T G A A T C G A T G C C T A G
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------TTGGCAAGCG
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A C T G A T G C G T C A C T G A A T C G A T G C C T A G
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

PB0147.1_Max_2/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TTGGCAAGCG----
GTGCCACGCGACTG
 A G C T A C G T A C T G A C T G A T G C G T C A C T G A A T C G A T G C C T A G A C G T A C G T A C G T A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCAAGCG
ARNTGACA----
 A C G T A C G T A G C T A C G T A C T G A C T G A T G C G T C A C T G A A T C G A T G C C T A G
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T