Information for 2-AGAGGGTTGCTCTGTD (Motif 12)

G T C A A T C G C G T A C T A G A C T G A C T G A G C T A C G T A C T G A G T C A C G T A G T C A C G T A C T G C G A T C G T A
Reverse Opposite:
G A C T C G T A A G T C C G T A C T A G C G T A C T A G A G T C G T C A C T G A A G T C A G T C A G T C A C G T T A G C A C G T
p-value:1e-11
log p-value:-2.645e+01
Information Content per bp:1.827
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.3 +/- 27.5bp
Average Position of motif in Background41.5 +/- 14.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:1
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AGAGGGTTGCTCTGTD
---AGGVNCCTTTGT-
 G T C A A T C G C G T A C T A G A C T G A C T G A G C T A C G T A C T G A G T C A C G T A G T C A C G T A C T G C G A T C G T A
A C G T A C G T A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGAGGGTTGCTCTGTD-
--NNCGTTGCTATGGNN
 G T C A A T C G C G T A C T A G A C T G A C T G A G C T A C G T A C T G A G T C A C G T A G T C A C G T A C T G C G A T C G T A A C G T
A C G T A C G T G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AGAGGGTTGCTCTGTD-
--NCCGTTGCTANGNGN
 G T C A A T C G C G T A C T A G A C T G A C T G A G C T A C G T A C T G A G T C A C G T A G T C A C G T A C T G C G A T C G T A A C G T
A C G T A C G T G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

SOX10/MA0442.1/Jaspar

Match Rank:4
Score:0.53
Offset:9
Orientation:forward strand
Alignment:AGAGGGTTGCTCTGTD
---------CTTTGT-
 G T C A A T C G C G T A C T A G A C T G A C T G A G C T A C G T A C T G A G T C A C G T A G T C A C G T A C T G C G A T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--AGAGGGTTGCTCTGTD-----
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T G T C A A T C G C G T A C T A G A C T G A C T G A G C T A C G T A C T G A G T C A C G T A G T C A C G T A C T G C G A T C G T A A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.51
Offset:8
Orientation:forward strand
Alignment:AGAGGGTTGCTCTGTD--
--------CCWTTGTYYB
 G T C A A T C G C G T A C T A G A C T G A C T G A G C T A C G T A C T G A G T C A C G T A G T C A C G T A C T G C G A T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

PB0151.1_Myf6_2/Jaspar

Match Rank:7
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:AGAGGGTTGCTCTGTD---
----GGNGCGNCTGTTNNN
 G T C A A T C G C G T A C T A G A C T G A C T G A G C T A C G T A C T G A G T C A C G T A G T C A C G T A C T G C G A T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

POL003.1_GC-box/Jaspar

Match Rank:8
Score:0.49
Offset:0
Orientation:forward strand
Alignment:AGAGGGTTGCTCTGTD
AGGGGGCGGGGCTG--
 G T C A A T C G C G T A C T A G A C T G A C T G A G C T A C G T A C T G A G T C A C G T A G T C A C G T A C T G C G A T C G T A
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.48
Offset:8
Orientation:forward strand
Alignment:AGAGGGTTGCTCTGTD--
--------CCTTTGTTTT
 G T C A A T C G C G T A C T A G A C T G A C T G A G C T A C G T A C T G A G T C A C G T A G T C A C G T A C T G C G A T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

YY1(Zf)/Promoter/Homer

Match Rank:10
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--AGAGGGTTGCTCTGTD
CAAGATGGCGGC------
 A C G T A C G T G T C A A T C G C G T A C T A G A C T G A C T G A G C T A C G T A C T G A G T C A C G T A G T C A C G T A C T G C G A T C G T A
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T A C G T A C G T A C G T A C G T