Information for 13-GCRCAVTGCC (Motif 23)

A C T G T G A C T C G A A T G C C G T A T C G A C A G T A C T G T A G C T A G C
Reverse Opposite:
A T C G A T C G G T A C G T C A A G C T C G A T A T C G A G C T A C T G A G T C
p-value:1e-2
log p-value:-5.165e+00
Information Content per bp:1.646
Number of Target Sequences with motif81.0
Percentage of Target Sequences with motif9.38%
Number of Background Sequences with motif3353.2
Percentage of Background Sequences with motif7.03%
Average Position of motif in Targets51.1 +/- 27.9bp
Average Position of motif in Background50.4 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0199.1_Zfp161_2/Jaspar

Match Rank:1
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GCRCAVTGCC-
GCCGCGCAGTGCGT
 A C G T A C G T A C G T A C T G T G A C T C G A A T G C C G T A T C G A C A G T A C T G T A G C T A G C A C G T
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCRCAVTGCC
VRRACAAWGG-
 A C G T A C T G T G A C T C G A A T G C C G T A T C G A C A G T A C T G T A G C T A G C
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCRCAVTGCC
GGAACAAAGR-
 A C G T A C T G T G A C T C G A A T G C C G T A T C G A C A G T A C T G T A G C T A G C
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GCRCAVTGCC---
TTGGCANNNTGCCAAG
 A C G T A C G T A C G T A C T G T G A C T C G A A T G C C G T A T C G A C A G T A C T G T A G C T A G C A C G T A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCRCAVTGCC
GAACAATGGN
 A C T G T G A C T C G A A T G C C G T A T C G A C A G T A C T G T A G C T A G C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCRCAVTGCC--
NAGGTCANTGACCT
 A C G T A C G T A C T G T G A C T C G A A T G C C G T A T C G A C A G T A C T G T A G C T A G C A C G T A C G T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

SOX10/MA0442.1/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCRCAVTGCC
--ACAAAG--
 A C T G T G A C T C G A A T G C C G T A T C G A C A G T A C T G T A G C T A G C
A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCRCAVTGCC
AAAACAATGG-
 A C G T A C T G T G A C T C G A A T G C C G T A T C G A C A G T A C T G T A G C T A G C
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GCRCAVTGCC-
NNTTTGCACACGGCCC
 A C G T A C G T A C G T A C G T A C G T A C T G T G A C T C G A A T G C C G T A T C G A C A G T A C T G T A G C T A G C A C G T
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCRCAVTGCC
VRAACAATGG-
 A C G T A C T G T G A C T C G A A T G C C G T A T C G A C A G T A C T G T A G C T A G C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T