Information for 4-TTCAGCACCTTGGCMA (Motif 10)

A C G T A G C T A T G C G T C A A T C G G T A C C G T A A G T C G T A C A C G T A C G T A T C G C T A G A G T C G T A C G T C A
Reverse Opposite:
A C G T A C T G A C T G A G T C A T G C G T C A C G T A A C T G A C T G C G A T A C T G A T G C C A G T A T C G C T G A C G T A
p-value:1e-10
log p-value:-2.444e+01
Information Content per bp:1.810
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.3 +/- 23.7bp
Average Position of motif in Background30.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTCAGCACCTTGGCMA-----
TTCAGCACCATGGACAGCGCC
 A C G T A G C T A T G C G T C A A T C G G T A C C G T A A G T C G T A C A C G T A C G T A T C G C T A G A G T C G T A C G T C A A C G T A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TTCAGCACCTTGGCMA-----
-TCAGCACCATGGACAGCTCC
 A C G T A G C T A T G C G T C A A T C G G T A C C G T A A G T C G T A C A C G T A C G T A T C G C T A G A G T C G T A C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:TTCAGCACCTTGGCMA-
--------NTTGGCANN
 A C G T A G C T A T G C G T C A A T C G G T A C C G T A A G T C G T A C A C G T A C G T A T C G C T A G A G T C G T A C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:TTCAGCACCTTGGCMA-
-------NNTTGGCANN
 A C G T A G C T A T G C G T C A A T C G G T A C C G T A A G T C G T A C A C G T A C G T A T C G C T A G A G T C G T A C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TTCAGCACCTTGGCMA
NNTNCGCACCTGTNGAN
 A C G T A C G T A G C T A T G C G T C A A T C G G T A C C G T A A G T C G T A C A C G T A C G T A T C G C T A G A G T C G T A C G T C A
G C A T C A G T G C A T A G C T G A T C T C A G G T A C C T G A A T G C T A G C A C G T A C T G A C G T C A T G C A T G G T C A A G C T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.55
Offset:9
Orientation:forward strand
Alignment:TTCAGCACCTTGGCMA
---------TTGGCA-
 A C G T A G C T A T G C G T C A A T C G G T A C C G T A A G T C G T A C A C G T A C G T A T C G C T A G A G T C G T A C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:TTCAGCACCTTGGCMA
--------CTTGGCAA
 A C G T A G C T A T G C G T C A A T C G G T A C C G T A A G T C G T A C A C G T A C G T A T C G C T A G A G T C G T A C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:TTCAGCACCTTGGCMA--------
-TGTGACCCTTAGCAACCGATTAA
 A C G T A G C T A T G C G T C A A T C G G T A C C G T A A G T C G T A C A C G T A C G T A T C G C T A G A G T C G T A C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.53
Offset:5
Orientation:forward strand
Alignment:TTCAGCACCTTGGCMA----
-----TACCATAGCAACGGT
 A C G T A G C T A T G C G T C A A T C G G T A C C G T A A G T C G T A C A C G T A C G T A T C G C T A G A G T C G T A C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

TCF4/MA0830.1/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TTCAGCACCTTGGCMA
---CGCACCTGCT---
 A C G T A G C T A T G C G T C A A T C G G T A C C G T A A G T C G T A C A C G T A C G T A T C G C T A G A G T C G T A C G T C A
A C G T A C G T A C G T G A T C T C A G G A T C C G T A A T G C T A G C C G A T C T A G A T G C C G A T A C G T A C G T A C G T