Information for 4-CTTTCDGCCAADGGGC (Motif 9)

A G T C A G C T A G C T A C G T A G T C C A G T A C T G T G A C G T A C C T G A C T G A C T G A T A C G C A T G C T A G T A G C
Reverse Opposite:
A T C G G A T C G T A C A T G C G A C T A G C T A G C T A C T G A C T G A G T C G C T A T C A G T G C A C T G A C T G A A C T G
p-value:1e-11
log p-value:-2.576e+01
Information Content per bp:1.694
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif23.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets42.7 +/- 21.2bp
Average Position of motif in Background56.7 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CTTTCDGCCAADGGGC
-----TGCCAA-----
 A G T C A G C T A G C T A C G T A G T C C A G T A C T G T G A C G T A C C T G A C T G A C T G A T A C G C A T G C T A G T A G C
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

E2F8/MA0865.1/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTTTCDGCCAADGGGC
TTTCCCGCCAAA----
 A G T C A G C T A G C T A C G T A G T C C A G T A C T G T G A C G T A C C T G A C T G A C T G A T A C G C A T G C T A G T A G C
G A C T A G C T A C G T A G T C A G T C A T G C T A C G A G T C T A G C C T G A C G T A G C T A A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CTTTCDGCCAADGGGC
---CGTGCCAAG----
 A G T C A G C T A G C T A C G T A G T C C A G T A C T G T G A C G T A C C T G A C T G A C T G A T A C G C A T G C T A G T A G C
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CTTTCDGCCAADGGGC
-----AGCCAATCGG-
 A G T C A G C T A G C T A C G T A G T C C A G T A C T G T G A C G T A C C T G A C T G A C T G A T A C G C A T G C T A G T A G C
A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CTTTCDGCCAADGGGC--
----CCGCCCAAGGGCAG
 A G T C A G C T A G C T A C G T A G T C C A G T A C T G T G A C G T A C C T G A C T G A C T G A T A C G C A T G C T A G T A G C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G

E2F7/MA0758.1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTTTCDGCCAADGGGC
TTTTCCCGCCAAAA---
 A C G T A G T C A G C T A G C T A C G T A G T C C A G T A C T G T G A C G T A C C T G A C T G A C T G A T A C G C A T G C T A G T A G C
C G A T C G A T A G C T A G C T A T G C A T G C A G T C T C A G A G T C A T G C C G T A C G T A G C T A C G T A A C G T A C G T A C G T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTTTCDGCCAADGGGC
-TTCCCGCCWG-----
 A G T C A G C T A G C T A C G T A G T C C A G T A C T G T G A C G T A C C T G A C T G A C T G A T A C G C A T G C T A G T A G C
A C G T A G C T A C G T A T G C A T G C A G T C A C T G A G T C A T G C G C T A A T C G A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTTTCDGCCAADGGGC
---GGTGCCAAGT---
 A G T C A G C T A G C T A C G T A G T C C A G T A C T G T G A C G T A C C T G A C T G A C T G A T A C G C A T G C T A G T A G C
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTTTCDGCCAADGGGC
TTTCCCGCCMAV----
 A G T C A G C T A G C T A C G T A G T C C A G T A C T G T G A C G T A C C T G A C T G A C T G A T A C G C A T G C T A G T A G C
C G A T G A C T A C G T A T G C A T G C A G T C A C T G A T G C T A G C G T A C T G C A T G A C A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CTTTCDGCCAADGGGC
----TTGCCAAG----
 A G T C A G C T A G C T A C G T A G T C C A G T A C T G T G A C G T A C C T G A C T G A C T G A T A C G C A T G C T A G T A G C
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T