Information for 11-MTCTCAMASAGCC (Motif 28)

G T C A C G A T A G T C A C G T A G T C C G T A T G C A C T G A T A C G C G T A A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A C G T A T C G A G C T A C G T A C G T A C T G C G T A A C T G C G T A A C G T
p-value:1e-9
log p-value:-2.090e+01
Information Content per bp:1.887
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.7 +/- 27.7bp
Average Position of motif in Background47.2 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.56
Offset:8
Orientation:forward strand
Alignment:MTCTCAMASAGCC
--------CAGCC
 G T C A C G A T A G T C A C G T A G T C C G T A T G C A C T G A T A C G C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---MTCTCAMASAGCC
AGCCACTCAAG-----
 A C G T A C G T A C G T G T C A C G A T A G T C A C G T A G T C C G T A T G C A C T G A T A C G C G T A A C T G A G T C A G T C
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:MTCTCAMASAGCC
------CACAGN-
 G T C A C G A T A G T C A C G T A G T C C G T A T G C A C T G A T A C G C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:4
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-MTCTCAMASAGCC
CCTGTCAA------
 A C G T G T C A C G A T A G T C A C G T A G T C C G T A T G C A C T G A T A C G C G T A A C T G A G T C A G T C
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-MTCTCAMASAGCC
GCTGTCAA------
 A C G T G T C A C G A T A G T C A C G T A G T C C G T A T G C A C T G A T A C G C G T A A C T G A G T C A G T C
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.49
Offset:0
Orientation:forward strand
Alignment:MTCTCAMASAGCC
ACATCAAAGG---
 G T C A C G A T A G T C A C G T A G T C C G T A T G C A C T G A T A C G C G T A A C T G A G T C A G T C
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:7
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--MTCTCAMASAGCC
ATTTCCCAGVAKSCY
 A C G T A C G T G T C A C G A T A G T C A C G T A G T C C G T A T G C A C T G A T A C G C G T A A C T G A G T C A G T C
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:8
Score:0.48
Offset:1
Orientation:forward strand
Alignment:MTCTCAMASAGCC--
-TGGCACCATGCCAA
 G T C A C G A T A G T C A C G T A G T C C G T A T G C A C T G A T A C G C G T A A C T G A G T C A G T C A C G T A C G T
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--MTCTCAMASAGCC
GSCTGTCACTCA---
 A C G T A C G T G T C A C G A T A G T C A C G T A G T C C G T A T G C A C T G A T A C G C G T A A C T G A G T C A G T C
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:MTCTCAMASAGCC
-----ACAAAG--
 G T C A C G A T A G T C A C G T A G T C C G T A T G C A C T G A T A C G C G T A A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T