Information for 4-AGGHCAGGCGTGT (Motif 7)

C G T A A C T G A C T G G A C T A G T C C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
Reverse Opposite:
C T G A A G T C C G T A A G T C T A C G G T A C T G A C A C G T A C T G C T G A A G T C A G T C A C G T
p-value:1e-9
log p-value:-2.155e+01
Information Content per bp:1.847
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.7 +/- 16.0bp
Average Position of motif in Background49.9 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AGGHCAGGCGTGT
TRAGGTCA-------
 A C G T A C G T C G T A A C T G A C T G G A C T A G T C C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AGGHCAGGCGTGT
CAAAGGTCAAGGG---
 A C G T A C G T A C G T C G T A A C T G A C T G G A C T A G T C C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGHCAGGCGTGT
AGGTCA-------
 C G T A A C T G A C T G G A C T A G T C C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGGHCAGGCGTGT
AAGGTCAC------
 A C G T C G T A A C T G A C T G G A C T A G T C C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGGHCAGGCGTGT
CAAAGGTCAG------
 A C G T A C G T A C G T C G T A A C T G A C T G G A C T A G T C C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AGGHCAGGCGTGT
ATCAAGGTCA-------
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G G A C T A G T C C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGGHCAGGCGTGT
CAAGGHCANV-----
 A C G T A C G T C G T A A C T G A C T G G A C T A G T C C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AGGHCAGGCGTGT
TCAAGGTCAN------
 A C G T A C G T A C G T C G T A A C T G A C T G G A C T A G T C C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGGHCAGGCGTGT
AGRGGTCA-------
 A C G T A C G T C G T A A C T G A C T G G A C T A G T C C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:10
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------AGGHCAGGCGTGT
TCTCAAAGGTCACGAG---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C T G G A C T A G T C C G T A A C T G A C T G A T G C A C T G A C G T A C T G A G C T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G A C G T A C G T A C G T