Information for 3-AAACCAAGGGAGC (Motif 6)

C G T A C G T A C G T A G T A C A G T C C G T A C G T A A C T G A C T G A C T G C T G A A C T G A T G C
Reverse Opposite:
A T C G A G T C A G C T G T A C A G T C A G T C A C G T A C G T A C T G A C T G A C G T A C G T A C G T
p-value:1e-9
log p-value:-2.181e+01
Information Content per bp:1.922
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets72.8 +/- 13.5bp
Average Position of motif in Background44.7 +/- 21.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AAACCAAGGGAGC
AAAACAAAGG----
 A C G T C G T A C G T A C G T A G T A C A G T C C G T A C G T A A C T G A C T G A C T G C T G A A C T G A T G C
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AAACCAAGGGAGC-
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T C G T A C G T A C G T A G T A C A G T C C G T A C G T A A C T G A C T G A C T G C T G A A C T G A T G C A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AAACCAAGGGAGC
AAAACAATGG---
 C G T A C G T A C G T A G T A C A G T C C G T A C G T A A C T G A C T G A C T G C T G A A C T G A T G C
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AAACCAAGGGAGC-
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T C G T A C G T A C G T A G T A C A G T C C G T A C G T A A C T G A C T G A C T G C T G A A C T G A T G C A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AAACCAAGGGAGC
VRAACAATGG---
 C G T A C G T A C G T A G T A C A G T C C G T A C G T A A C T G A C T G A C T G C T G A A C T G A T G C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AAACCAAGGGAGC
-AACAAAGG----
 C G T A C G T A C G T A G T A C A G T C C G T A C G T A A C T G A C T G A C T G C T G A A C T G A T G C
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:AAACCAAGGGAGC
-------CGGAGC
 C G T A C G T A C G T A G T A C A G T C C G T A C G T A A C T G A C T G A C T G C T G A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AAACCAAGGGAGC
-GAACAATGGN--
 C G T A C G T A C G T A G T A C A G T C C G T A C G T A A C T G A C T G A C T G C T G A A C T G A T G C
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:AAACCAAGGGAGC----
-------GGGAGGACNG
 C G T A C G T A C G T A G T A C A G T C C G T A C G T A A C T G A C T G A C T G C T G A A C T G A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AAACCAAGGGAGC
-RAACAATGGN--
 C G T A C G T A C G T A G T A C A G T C C G T A C G T A A C T G A C T G A C T G C T G A A C T G A T G C
A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T