Information for 20-ATGTCTAGCATGC (Motif 25)

C G T A G A C T C T A G C G A T A G T C A G C T C T G A A C T G A G T C C T G A A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A G C T A C T G A G T C A G C T C T G A C T A G C G T A A G T C C G T A G A C T
p-value:1e-8
log p-value:-1.853e+01
Information Content per bp:1.900
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets38.3 +/- 23.9bp
Average Position of motif in Background55.9 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:ATGTCTAGCATGC
-GGTCTGGCAT--
 C G T A G A C T C T A G C G A T A G T C A G C T C T G A A C T G A G T C C T G A A C G T A C T G A G T C
A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:ATGTCTAGCATGC----
-CTACTAGGATGTNNTN
 C G T A G A C T C T A G C G A T A G T C A G C T C T G A A C T G A G T C C T G A A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C

BCL6B/MA0731.1/Jaspar

Match Rank:3
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---ATGTCTAGCATGC-
TGAATTCCTAGAAAGCA
 A C G T A C G T A C G T C G T A G A C T C T A G C G A T A G T C A G C T C T G A A C T G A G T C C T G A A C G T A C T G A G T C A C G T
A C G T A C T G C T G A C T G A A C G T A G C T A G T C A G T C A C G T T G C A A C T G G T C A C G T A C G T A C T A G G A T C C T G A

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----ATGTCTAGCATGC
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T C G T A G A C T C T A G C G A T A G T C A G C T C T G A A C T G A G T C C T G A A C G T A C T G A G T C
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:ATGTCTAGCATGC
-TGTCTGDCACCT
 C G T A G A C T C T A G C G A T A G T C A G C T C T G A A C T G A G T C C T G A A C G T A C T G A G T C
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:6
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:ATGTCTAGCATGC--
-----TTGCGTGCVA
 C G T A G A C T C T A G C G A T A G T C A G C T C T G A A C T G A G T C C T G A A C G T A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:ATGTCTAGCATGC
BTVATTWGCATA-
 C G T A G A C T C T A G C G A T A G T C A G C T C T G A A C T G A G T C C T G A A C G T A C T G A G T C
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:ATGTCTAGCATGC
CTGTCTGTCACCT
 C G T A G A C T C T A G C G A T A G T C A G C T C T G A A C T G A G T C C T G A A C G T A C T G A G T C
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

SMAD3/MA0795.1/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:ATGTCTAGCATGC
-TGTCTAGACG--
 C G T A G A C T C T A G C G A T A G T C A G C T C T G A A C T G A G T C C T G A A C G T A C T G A G T C
A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.50
Offset:0
Orientation:forward strand
Alignment:ATGTCTAGCATGC
CTGTCTGG-----
 C G T A G A C T C T A G C G A T A G T C A G C T C T G A A C T G A G T C C T G A A C G T A C T G A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T