Information for 13-GTCTGHAAACCTA (Motif 24)

A C T G A C G T A G T C C G A T C T A G G A T C G T C A C G T A C G T A A G T C A T G C A C G T C G T A
Reverse Opposite:
A C G T G T C A A T C G C T A G A C G T A C G T C A G T C A T G A G T C C G T A C T A G C G T A A G T C
p-value:1e-9
log p-value:-2.249e+01
Information Content per bp:1.793
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.0 +/- 27.2bp
Average Position of motif in Background35.3 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GTCTGHAAACCTA
VBSYGTCTGG-------
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G A T C T A G G A T C G T C A C G T A C G T A A G T C A T G C A C G T C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GTCTGHAAACCTA
TGTCTGDCACCT--
 A C G T A C T G A C G T A G T C C G A T C T A G G A T C G T C A C G T A C G T A A G T C A T G C A C G T C G T A
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GTCTGHAAACCTA
TWGTCTGV-------
 A C G T A C G T A C T G A C G T A G T C C G A T C T A G G A T C G T C A C G T A C G T A A G T C A T G C A C G T C G T A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GTCTGHAAACCTA
-TATGCAAAT---
 A C T G A C G T A G T C C G A T C T A G G A T C G T C A C G T A C G T A A G T C A T G C A C G T C G T A
A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GTCTGHAAACCTA
CTGTCTGG-------
 A C G T A C G T A C T G A C G T A G T C C G A T C T A G G A T C G T C A C G T A C G T A A G T C A T G C A C G T C G T A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GTCTGHAAACCTA
-TATGCAAAT---
 A C T G A C G T A G T C C G A T C T A G G A T C G T C A C G T A C G T A A G T C A T G C A C G T C G T A
A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T

MTF1/MA0863.1/Jaspar

Match Rank:7
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GTCTGHAAACCTA
GTGCCGTGTGCAAA----
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G A T C T A G G A T C G T C A C G T A C G T A A G T C A T G C A C G T C G T A
C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A A C G T A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GTCTGHAAACCTA-
TTGTATGCAAATTAGA
 A C G T A C G T A C T G A C G T A G T C C G A T C T A G G A T C G T C A C G T A C G T A A G T C A T G C A C G T C G T A A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GTCTGHAAACCTA-
TTGTATGCAAATTAGA
 A C G T A C G T A C T G A C G T A G T C C G A T C T A G G A T C G T C A C G T A C G T A A G T C A T G C A C G T C G T A A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0144.1_Pou2f2/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GTCTGHAAACCTA-
TTGTATGCAAATTAGA
 A C G T A C G T A C T G A C G T A G T C C G A T C T A G G A T C G T C A C G T A C G T A A G T C A T G C A C G T C G T A A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A