Information for 4-GGTTGAGGGC (Motif 19)

A C T G C T A G A C G T A G C T A T C G T G C A A C T G A C T G C T A G A G T C
Reverse Opposite:
T A C G A G T C G T A C A G T C A C G T A T G C T C G A C G T A G A T C A G T C
p-value:1e-11
log p-value:-2.586e+01
Information Content per bp:1.839
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.52%
Number of Background Sequences with motif138.1
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets57.9 +/- 22.7bp
Average Position of motif in Background53.5 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GGTTGAGGGC--
-CTTGAGTGGCT
 A C T G C T A G A C G T A G C T A T C G T G C A A C T G A C T G C T A G A G T C A C G T A C G T
A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GGTTGAGGGC-
-BTBRAGTGSN
 A C T G C T A G A C G T A G C T A T C G T G C A A C T G A C T G C T A G A G T C A C G T
A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GGTTGAGGGC--
--TTGAGTGSTT
 A C T G C T A G A C G T A G C T A T C G T G C A A C T G A C T G C T A G A G T C A C G T A C G T
A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GGTTGAGGGC--
---TNNGGGCAG
 A C T G C T A G A C G T A G C T A T C G T G C A A C T G A C T G C T A G A G T C A C G T A C G T
A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GGTTGAGGGC-
-CTYRAGTGSY
 A C T G C T A G A C G T A G C T A T C G T G C A A C T G A C T G C T A G A G T C A C G T
A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GGTTGAGGGC-
AGGTCAAGGTCA
 A C G T A C T G C T A G A C G T A G C T A T C G T G C A A C T G A C T G C T A G A G T C A C G T
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGTTGAGGGC-
AGGTCAAGGTCA
 A C G T A C T G C T A G A C G T A G C T A T C G T G C A A C T G A C T G C T A G A G T C A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

Hoxa9/MA0594.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GGTTGAGGGC
TGATTTATGGC
 A C G T A C T G C T A G A C G T A G C T A T C G T G C A A C T G A C T G C T A G A G T C
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGTTGAGGGC-
TGATTTATGGCC
 A C G T A C T G C T A G A C G T A G C T A T C G T G C A A C T G A C T G C T A G A G T C A C G T
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

PB0200.1_Zfp187_2/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GGTTGAGGGC--
NNAGGGACAAGGGCNC
 A C G T A C G T A C G T A C G T A C T G C T A G A C G T A G C T A T C G T G C A A C T G A C T G C T A G A G T C A C G T A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C