Information for 5-GCAGGGMTTGTCC (Motif 11)

A C T G A G T C G T C A A C T G A C T G A C T G T G C A C A G T A G C T A T C G A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G G T C A A T G C C T G A G T C A A C G T G T A C A G T C A G T C A C G T A C T G G T A C
p-value:1e-9
log p-value:-2.259e+01
Information Content per bp:1.801
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif35.7
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets58.9 +/- 20.1bp
Average Position of motif in Background42.8 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GCAGGGMTTGTCC
---GGGGATTTCC
 A C T G A G T C G T C A A C T G A C T G A C T G T G C A C A G T A G C T A T C G A C G T A G T C A G T C
A C G T A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCAGGGMTTGTCC
-MKGGGYGTGGCC
 A C T G A G T C G T C A A C T G A C T G A C T G T G C A C A G T A G C T A T C G A C G T A G T C A G T C
A C G T G T A C C A G T A C T G A C T G A C T G G A T C A C T G A C G T A C T G A C T G A G T C G A T C

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCAGGGMTTGTCC
---GGGAATTTCC
 A C T G A G T C G T C A A C T G A C T G A C T G T G C A C A G T A G C T A T C G A C G T A G T C A G T C
A C G T A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GCAGGGMTTGTCC
---GGGAATTTCC
 A C T G A G T C G T C A A C T G A C T G A C T G T G C A C A G T A G C T A T C G A C G T A G T C A G T C
A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GCAGGGMTTGTCC-
--NGGGGATTTCCC
 A C T G A G T C G T C A A C T G A C T G A C T G T G C A C A G T A G C T A T C G A C G T A G T C A G T C A C G T
A C G T A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GCAGGGMTTGTCC
---GGGGATTTCC
 A C T G A G T C G T C A A C T G A C T G A C T G T G C A C A G T A G C T A T C G A C G T A G T C A G T C
A C G T A C G T A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

Klf12/MA0742.1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCAGGGMTTGTCC
NANAAGGGCGTGGTC
 A C G T A C G T A C T G A G T C G T C A A C T G A C T G A C T G T G C A C A G T A G C T A T C G A C G T A G T C A G T C
C G T A C G T A C G A T C G T A C G T A C T A G T C A G C T A G G A T C C A T G A C G T A T C G C A T G A G C T G T A C

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCAGGGMTTGTCC
--DGGGYGKGGC-
 A C T G A G T C G T C A A C T G A C T G A C T G T G C A C A G T A G C T A T C G A C G T A G T C A G T C
A C G T A C G T C G T A C T A G A C T G A C T G G A C T C T A G C A G T C T A G C A T G G A T C A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCAGGGMTTGTCC
GCAGTGATTT---
 A C T G A G T C G T C A A C T G A C T G A C T G T G C A C A G T A G C T A T C G A C G T A G T C A G T C
C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GCAGGGMTTGTCC-
--GGGGATTCCCCC
 A C T G A G T C G T C A A C T G A C T G A C T G T G C A C A G T A G C T A T C G A C G T A G T C A G T C A C G T
A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C