Information for 4-CAGCCCTGGCTGC (Motif 10)

A G T C T C G A A C T G A T G C A T G C T G A C C A G T C A T G A T C G A T G C A C G T A T C G T A G C
Reverse Opposite:
A C T G A T G C G T C A A T C G A T G C G T A C G T C A A C T G A T C G A T C G A G T C A G C T T A C G
p-value:1e-9
log p-value:-2.279e+01
Information Content per bp:1.746
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.40%
Number of Background Sequences with motif200.1
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets44.5 +/- 24.1bp
Average Position of motif in Background48.4 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAGCCCTGGCTGC
GTCATGCHTGRCTGS
 A C G T A C G T A G T C T C G A A C T G A T G C A T G C T G A C C A G T C A T G A T C G A T G C A C G T A T C G T A G C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAGCCCTGGCTGC-----
GGYAGCAYDTGCTDCCCNNN
 A C G T A C G T A G T C T C G A A C T G A T G C A T G C T G A C C A G T C A T G A T C G A T G C A C G T A T C G T A G C A C G T A C G T A C G T A C G T A C G T
A C T G C T A G G A T C C G T A C T A G A G T C T G C A G A C T C G T A A C G T T C A G A G T C A C G T C T G A A G T C A G T C G A T C C G T A T C A G T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGCCCTGGCTGC
CAGCC--------
 A G T C T C G A A C T G A T G C A T G C T G A C C A G T C A T G A T C G A T G C A C G T A T C G T A G C
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CAGCCCTGGCTGC
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A G T C T C G A A C T G A T G C A T G C T G A C C A G T C A T G A T C G A T G C A C G T A T C G T A G C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCCTGGCTGC
CACAGN---------
 A C G T A C G T A G T C T C G A A C T G A T G C A T G C T G A C C A G T C A T G A T C G A T G C A C G T A T C G T A G C
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CAGCCCTGGCTGC
--GCTCGGSCTC-
 A G T C T C G A A C T G A T G C A T G C T G A C C A G T C A T G A T C G A T G C A C G T A T C G T A G C
A C G T A C G T C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.52
Offset:5
Orientation:forward strand
Alignment:CAGCCCTGGCTGC
-----TWGTCTGV
 A G T C T C G A A C T G A T G C A T G C T G A C C A G T C A T G A T C G A T G C A C G T A T C G T A G C
A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Zfx/MA0146.2/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CAGCCCTGGCTGC-
CAGGCCNNGGCCNN
 A G T C T C G A A C T G A T G C A T G C T G A C C A G T C A T G A T C G A T G C A C G T A T C G T A G C A C G T
A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CAGCCCTGGCTGC---------
MACCTTCYATGGCTCCCTAKTGCCY
 A C G T A C G T A C G T A G T C T C G A A C T G A T G C A T G C T G A C C A G T C A T G A T C G A T G C A C G T A T C G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A T G C A A G T C A G T C G A C T C A G T A T G C G A T C C T G A A C G T C T A G C T A G A G T C A C G T A G T C A G T C A G T C G A C T C G T A A C G T A G C T C T A G G A T C G A T C G A T C

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:10
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CAGCCCTGGCTGC-
-TGCCCTGAGGGCA
 A G T C T C G A A C T G A T G C A T G C T G A C C A G T C A T G A T C G A T G C A C G T A T C G T A G C A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A