Information for 4-GGCCCTGVCAADCCBG (Motif 5)

A C T G C T A G A T G C A G T C A G T C A C G T A C T G T C A G A G T C G T C A C T G A C G T A A G T C A G T C A T G C A T C G
Reverse Opposite:
A T G C T A C G C T A G A C T G G C A T A G C T A C G T A C T G A G T C A G T C C G T A A C T G A C T G A T C G A G T C A G T C
p-value:1e-13
log p-value:-3.077e+01
Information Content per bp:1.800
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.3 +/- 15.9bp
Average Position of motif in Background42.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GGCCCTGVCAADCCBG
---CTTGGCAA-----
 A C T G C T A G A T G C A G T C A G T C A C G T A C T G T C A G A G T C G T C A C T G A C G T A A G T C A G T C A T G C A T C G
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GGCCCTGVCAADCCBG
-TCCCAGMCRAGCCCC
 A C T G C T A G A T G C A G T C A G T C A C G T A C T G T C A G A G T C G T C A C T G A C G T A A G T C A G T C A T G C A T C G
A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

MEIS2/MA0774.1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GGCCCTGVCAADCCBG
---GCTGTCAA-----
 A C T G C T A G A T G C A G T C A G T C A C G T A C T G T C A G A G T C G T C A C T G A C G T A A G T C A G T C A T G C A T C G
A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGCCCTGVCAADCCBG
AAAGACCTGTCAATCC--
 A C G T A C G T A C T G C T A G A T G C A G T C A G T C A C G T A C T G T C A G A G T C G T C A C T G A C G T A A G T C A G T C A T G C A T C G
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GGCCCTGVCAADCCBG
--VGCTGWCAVB----
 A C T G C T A G A T G C A G T C A G T C A C G T A C T G T C A G A G T C G T C A C T G A C G T A A G T C A G T C A T G C A T C G
A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GGCCCTGVCAADCCBG
AAGCACCTGTCAATAT--
 A C G T A C G T A C T G C T A G A T G C A G T C A G T C A C G T A C T G T C A G A G T C G T C A C T G A C G T A A G T C A G T C A T G C A T C G
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GGCCCTGVCAADCCBG
---NCTGTCAATCAN-
 A C T G C T A G A T G C A G T C A G T C A C G T A C T G T C A G A G T C G T C A C T G A C G T A A G T C A G T C A T G C A T C G
A C G T A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GGCCCTGVCAADCCBG
---CCTGTCAA-----
 A C T G C T A G A T G C A G T C A G T C A C G T A C T G T C A G A G T C G T C A C T G A C G T A A G T C A G T C A T G C A T C G
A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGCCCTGVCAADCCBG
CGCCCCCTGACA------
 A C G T A C G T A C T G C T A G A T G C A G T C A G T C A C G T A C T G T C A G A G T C G T C A C T G A C G T A A G T C A G T C A T G C A T C G
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GGCCCTGVCAADCCBG
---RHTGWCAR-----
 A C T G C T A G A T G C A G T C A G T C A C G T A C T G T C A G A G T C G T C A C T G A C G T A A G T C A G T C A T G C A T C G
A C G T A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T