Information for 13-ATGATGAAATATT (Motif 13)

C T G A C A G T C T A G C G T A A C G T A C T G C G T A C G T A C T G A A G C T C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A C G A T C T G A A G C T A C G T A C G T G T A C C G T A G C A T A G T C G C T A A G C T
p-value:1e-9
log p-value:-2.149e+01
Information Content per bp:1.802
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.0 +/- 19.4bp
Average Position of motif in Background57.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ATGATGAAATATT
ATGATGCAAT---
 C T G A C A G T C T A G C G T A A C G T A C T G C G T A C G T A C T G A A G C T C G T A A C G T A C G T
T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T A C G T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:ATGATGAAATATT--
-NNTNNCAATATTAG
 C T G A C A G T C T A G C G T A A C G T A C T G C G T A C G T A C T G A A G C T C G T A A C G T A C G T A C G T A C G T
A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:ATGATGAAATATT--
-NNTNNCAATATTAG
 C T G A C A G T C T A G C G T A A C G T A C T G C G T A C G T A C T G A A G C T C G T A A C G T A C G T A C G T A C G T
A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:ATGATGAAATATT
MTGATGCAAT---
 C T G A C A G T C T A G C G T A A C G T A C T G C G T A C G T A C T G A A G C T C G T A A C G T A C G T
T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T A C G T A C G T A C G T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:forward strand
Alignment:ATGATGAAATATT--
--GGTTAAACATTAA
 C T G A C A G T C T A G C G T A A C G T A C T G C G T A C G T A C T G A A G C T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A

PB0146.1_Mafk_2/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ATGATGAAATATT---
-CCTTGCAATTTTTNN
 C T G A C A G T C T A G C G T A A C G T A C T G C G T A C G T A C T G A A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

ATF4/MA0833.1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ATGATGAAATATT
GGATGATGCAATA--
 A C G T A C G T C T G A C A G T C T A G C G T A A C G T A C T G C G T A C G T A C T G A A G C T C G T A A C G T A C G T
C T A G C A T G T G C A A C G T C T A G C G T A A G C T C A T G G A T C G T C A G C T A A G C T T G C A A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:8
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:ATGATGAAATATT
------AATTATT
 C T G A C A G T C T A G C G T A A C G T A C T G C G T A C G T A C T G A A G C T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:ATGATGAAATATT---
----TGAATTATGCAT
 C T G A C A G T C T A G C G T A A C G T A C T G C G T A C G T A C T G A A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ATGATGAAATATT
NATGTTGCAA----
 A C G T C T G A C A G T C T A G C G T A A C G T A C T G C G T A C G T A C T G A A G C T C G T A A C G T A C G T
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T A C G T A C G T A C G T