Information for 7-GCAGAGGACCATG (Motif 5)

A C T G A G T C C G T A A C T G C G T A A C T G A T C G G C T A G T A C G T A C C G T A A C G T A C T G
Reverse Opposite:
A G T C G T C A A C G T A C T G A C T G C A G T A T G C G T A C A C G T A G T C A C G T A C T G A G T C
p-value:1e-12
log p-value:-2.921e+01
Information Content per bp:1.847
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif6.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.1 +/- 25.2bp
Average Position of motif in Background62.6 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:1
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCAGAGGACCATG
AAGGCCAGATGGTCCGG
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G C G T A A C T G A T C G G C T A G T A C G T A C C G T A A C G T A C T G
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:2
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCAGAGGACCATG
AACAGATGGC----
 A C G T A C T G A G T C C G T A A C T G C G T A A C T G A T C G G C T A G T A C G T A C C G T A A C G T A C T G
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCAGAGGACCATG---
GCAGCCAAGCGTGACN
 A C T G A G T C C G T A A C T G C G T A A C T G A T C G G C T A G T A C G T A C C G T A A C G T A C T G A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCAGAGGACCATG
AACAGATGGT----
 A C G T A C T G A G T C C G T A A C T G C G T A A C T G A T C G G C T A G T A C G T A C C G T A A C G T A C T G
T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCAGAGGACCATG
CCAGACRSVB---
 A C T G A G T C C G T A A C T G C G T A A C T G A T C G G C T A G T A C G T A C C G T A A C G T A C T G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GCAGAGGACCATG
SDGCAGGTGCNS---
 A C G T A C G T A C T G A G T C C G T A A C T G C G T A A C T G A T C G G C T A G T A C G T A C C G T A A C G T A C T G
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GCAGAGGACCATG
ANCAGCTG------
 A C G T A C T G A G T C C G T A A C T G C G T A A C T G A T C G G C T A G T A C G T A C C G T A A C G T A C T G
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GCAGAGGACCATG
NNVVCAGCTGBN----
 A C G T A C G T A C G T A C T G A G T C C G T A A C T G C G T A A C T G A T C G G C T A G T A C G T A C C G T A A C G T A C T G
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T A C G T A C G T A C G T

ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GCAGAGGACCATG-
GGGCGATGACCAYTC
 A C G T A C T G A G T C C G T A A C T G C G T A A C T G A T C G G C T A G T A C G T A C C G T A A C G T A C T G A C G T
C T A G T A C G T C A G A G T C A C T G T G C A A G C T A C T G G T C A G T A C G A T C C T G A A G T C A C G T A T G C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GCAGAGGACCATG--
SCAGYCADGCATGAC
 A C T G A G T C C G T A A C T G C G T A A C T G A T C G G C T A G T A C G T A C C G T A A C G T A C T G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C