Information for 11-TKTTGAGSTACAK (Motif 12)

A C G T A C T G A C G T C G A T A C T G C G T A A C T G T A G C A G C T C T G A A G T C G C T A A C G T
Reverse Opposite:
G T C A C A G T A C T G A G C T C T G A A T C G A G T C A C G T A G T C C G T A G T C A G T A C C G T A
p-value:1e-9
log p-value:-2.243e+01
Information Content per bp:1.877
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif18.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets50.9 +/- 30.7bp
Average Position of motif in Background55.0 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TKTTGAGSTACAK---
--TTGACCTANTTATN
 A C G T A C T G A C G T C G A T A C T G C G T A A C T G T A G C A G C T C T G A A G T C G C T A A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TKTTGAGSTACAK-
--NTGATTGACAGN
 A C G T A C T G A C G T C G A T A C T G C G T A A C T G T A G C A G C T C T G A A G T C G C T A A C G T A C G T
A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TKTTGAGSTACAK--
---TGAGTGACAGSC
 A C G T A C T G A C G T C G A T A C T G C G T A A C T G T A G C A G C T C T G A A G T C G C T A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TKTTGAGSTACAK-
--BTGABTGACAGS
 A C G T A C T G A C G T C G A T A C T G C G T A A C T G T A G C A G C T C T G A A G T C G C T A A C G T A C G T
A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

DMRT3/MA0610.1/Jaspar

Match Rank:5
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TKTTGAGSTACAK-
---NTTGATACATT
 A C G T A C T G A C G T C G A T A C T G C G T A A C T G T A G C A G C T C T G A A G T C G C T A A C G T A C G T
A C G T A C G T A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TKTTGAGSTACAK
ATATTTACATA---
 A C G T A C G T A C T G A C G T C G A T A C T G C G T A A C T G T A G C A G C T C T G A A G T C G C T A A C G T
C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A A C G T A C G T A C G T

FOXC2/MA0846.1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TKTTGAGSTACAK
TTTGTTTACTTA---
 A C G T A C G T A C G T A C T G A C G T C G A T A C T G C G T A A C T G T A G C A G C T C T G A A G T C G C T A A C G T
C G A T C G A T G A C T T C A G G A C T C A G T C A G T C T G A A G T C C G A T G A C T C G T A A C G T A C G T A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----TKTTGAGSTACAK
NNTTCCTTTGATCTANA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G A T A C T G C G T A A C T G T A G C A G C T C T G A A G T C G C T A A C G T
C G A T C G A T C G A T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T C T G A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TKTTGAGSTACAK
---TGACCTARTT
 A C G T A C T G A C G T C G A T A C T G C G T A A C T G T A G C A G C T C T G A A G T C G C T A A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

PB0121.1_Foxj3_2/Jaspar

Match Rank:10
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----TKTTGAGSTACAK
NNCTTTGTTTTGNTNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G A T A C T G C G T A A C T G T A G C A G C T C T G A A G T C G C T A A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T A C G T