Information for 3-GCGCCGCCATCTTCCC (Motif 6)

A T C G A T G C A C T G A G T C A G T C A C T G A G T C A G T C C G T A A G C T A T G C A C G T A G C T G T A C A G T C A G T C
Reverse Opposite:
C T A G A C T G C A T G C T G A C G T A A T C G C T G A A C G T A C T G A C T G A G T C A C T G A C T G G T A C A T C G A T G C
p-value:1e-13
log p-value:-3.065e+01
Information Content per bp:1.861
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.2 +/- 21.7bp
Average Position of motif in Background19.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:GCGCCGCCATCTTCCC
--GCCGCCATCTTG--
 A T C G A T G C A C T G A G T C A G T C A C T G A G T C A G T C C G T A A G C T A T G C A C G T A G C T G T A C A G T C A G T C
A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:GCGCCGCCATCTTCCC
--GCNGCCATCTTG--
 A T C G A T G C A C T G A G T C A G T C A C T G A G T C A G T C C G T A A G C T A T G C A C G T A G C T G T A C A G T C A G T C
A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCGCCGCCATCTTCCC
-GTCCGCCATTA----
 A T C G A T G C A C T G A G T C A G T C A C T G A G T C A G T C C G T A A G C T A T G C A C G T A G C T G T A C A G T C A G T C
A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GCGCCGCCATCTTCCC
TACGCCCCGCCACTCTG--
 A C G T A C G T A C G T A T C G A T G C A C T G A G T C A G T C A C T G A G T C A G T C C G T A A G C T A T G C A C G T A G C T G T A C A G T C A G T C
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCGCCGCCATCTTCCC
GCTCCGCCCMCY----
 A T C G A T G C A C T G A G T C A G T C A C T G A G T C A G T C C G T A A G C T A T G C A C G T A G C T G T A C A G T C A G T C
C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T A C G T A C G T A C G T A C G T

SP2/MA0516.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCGCCGCCATCTTCCC
GCCCCGCCCCCTCCC-
 A T C G A T G C A C T G A G T C A G T C A C T G A G T C A G T C C G T A A G C T A T G C A C G T A G C T G T A C A G T C A G T C
A T C G A G T C G A T C A T G C A G T C C A T G A G T C A G T C A G T C G A T C G A T C A G C T A T G C A T G C A T G C A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCGCCGCCATCTTCCC--
-CCNNACCATCTGGCCTN
 A T C G A T G C A C T G A G T C A G T C A C T G A G T C A G T C C G T A A G C T A T G C A C G T A G C T G T A C A G T C A G T C A C G T A C G T
A C G T A G T C T A G C T A C G C T A G T C G A G T A C A G T C C G T A A G C T T G A C A G C T C A T G A T C G G T A C G A T C A G C T C A G T

Sp1(Zf)/Promoter/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCGCCGCCATCTTCCC
GGCCCCGCCCCC-----
 A C G T A T C G A T G C A C T G A G T C A G T C A C T G A G T C A G T C C G T A A G C T A T G C A C G T A G C T G T A C A G T C A G T C
T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C A C G T A C G T A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GCGCCGCCATCTTCCC
-----GCCATCTGTT-
 A T C G A T G C A C T G A G T C A G T C A C T G A G T C A G T C C G T A A G C T A T G C A C G T A G C T G T A C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T

PB0124.1_Gabpa_2/Jaspar

Match Rank:10
Score:0.56
Offset:6
Orientation:forward strand
Alignment:GCGCCGCCATCTTCCC------
------CCGTCTTCCCCCTCAC
 A T C G A T G C A C T G A G T C A G T C A C T G A G T C A G T C C G T A A G C T A T G C A C G T A G C T G T A C A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C A G T C C A T G A C G T G A T C G C A T G A C T G A T C A G T C A T G C G T A C G A T C A G C T T A G C T G C A G A T C