Information for 20-TCAATTCGCT (Motif 19)

A C G T A G T C C G T A C T G A A C G T C G A T A T G C C T A G A G T C A C G T
Reverse Opposite:
C G T A C T A G G A T C A T C G C G T A C G T A A G C T A C G T A C T G G T C A
p-value:1e-8
log p-value:-1.961e+01
Information Content per bp:1.864
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif11.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets33.4 +/- 28.7bp
Average Position of motif in Background55.3 +/- 34.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TCAATTCGCT----
AATCAATTCAATAATT
 A C G T A C G T A C G T A G T C C G T A C T G A A C G T C G A T A T G C C T A G A G T C A C G T A C G T A C G T A C G T A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:2
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TCAATTCGCT
HNRAATCAAT-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A A C G T C G A T A T G C C T A G A G T C A C G T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

PH0009.1_Bsx/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TCAATTCGCT---
CAGGTAATTACCTCAG
 A C G T A C G T A C G T A C G T A G T C C G T A C T G A A C G T C G A T A T G C C T A G A G T C A C G T A C G T A C G T A C G T
T G A C T G C A C T A G C A T G G A C T T G C A G T C A A C G T A C G T C T G A A T G C G A T C A G C T T A G C C T G A C T A G

HESX1/MA0894.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TCAATTCGCT
NCCAATTANC-
 A C G T A C G T A G T C C G T A C T G A A C G T C G A T A T G C C T A G A G T C A C G T
C T A G A G T C G A T C C T G A G T C A A G C T G A C T G C T A C T A G A G T C A C G T

PH0024.1_Dlx5/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TCAATTCGCT---
GGGGTAATTAGCTCTG
 A C G T A C G T A C G T A C G T A G T C C G T A C T G A A C G T C G A T A T G C C T A G A G T C A C G T A C G T A C G T A C G T
A T C G A T C G T C A G T C A G G A C T G T C A C G T A G A C T C A G T C T G A T A C G A G T C A C G T T G A C A C G T A T C G

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TCAATTCGCT
TAATCAATTA---
 A C G T A C G T A C G T A C G T A G T C C G T A C T G A A C G T C G A T A T G C C T A G A G T C A C G T
C G A T C T G A C G T A A G C T A G T C T G C A C T G A A C G T A G C T G C T A A C G T A C G T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TCAATTCGCT--
NNNNTGAATTCANNNC
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A A C G T C G A T A T G C C T A G A G T C A C G T A C G T A C G T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

PH0171.1_Nkx2-1/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TCAATTCGCT--
AANTTCAAGTGGCTTN
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A A C G T C G A T A T G C C T A G A G T C A C G T A C G T A C G T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

PH0108.1_Msx3/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TCAATTCGCT---
NNNTTAATTGGTTTTN
 A C G T A C G T A C G T A C G T A G T C C G T A C T G A A C G T C G A T A T G C C T A G A G T C A C G T A C G T A C G T A C G T
C G T A C G T A G T C A G A C T G A C T C G T A C G T A A C G T A G C T C T A G T A C G A C G T G A C T C A G T A G C T A C T G

PH0074.1_Hoxd1/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TCAATTCGCT---
TAAACTAATTAGCTGTA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A A C G T C G A T A T G C C T A G A G T C A C G T A C G T A C G T A C G T
C G A T T C G A G C T A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G T C A C G T A C T G C A G T G C T A