Information for 6-AAAGGMCAYKTGYYST (Motif 12)

C G T A C G T A C G T A A C T G C A T G G T A C A G T C C T G A A G T C A C G T A C G T A T C G A G C T A G C T A T G C A C G T
Reverse Opposite:
C G T A A T C G C T G A C T G A A T G C C G T A G T C A C T A G A G C T A C T G A C T G G A T C A G T C C G A T A C G T A C G T
p-value:1e-10
log p-value:-2.354e+01
Information Content per bp:1.843
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.0 +/- 24.4bp
Average Position of motif in Background70.0 +/- 17.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0053.1_Rara_1/Jaspar

Match Rank:1
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AAAGGMCAYKTGYYST
TCTCAAAGGTCACCTG----
 A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C T G C A T G G T A C A G T C C T G A A G T C A C G T A C G T A T C G A G C T A G C T A T G C A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----AAAGGMCAYKTGYYST
TCTCAAAGGTCACGAG----
 A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C T G C A T G G T A C A G T C C T G A A G T C A C G T A C G T A T C G A G C T A G C T A T G C A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G A C G T A C G T A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:3
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----AAAGGMCAYKTGYYST
ANGNAAAGGTCA--------
 A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C T G C A T G G T A C A G T C C T G A A G T C A C G T A C G T A T C G A G C T A G C T A T G C A C G T
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AAAGGMCAYKTGYYST
CAAGGHCANV------
 C G T A C G T A C G T A A C T G C A T G G T A C A G T C C T G A A G T C A C G T A C G T A T C G A G C T A G C T A T G C A C G T
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AAAGGMCAYKTGYYST
-AAGGTCAC-------
 C G T A C G T A C G T A A C T G C A T G G T A C A G T C C T G A A G T C A C G T A C G T A T C G A G C T A G C T A T G C A C G T
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AAAGGMCAYKTGYYST
CAAAGGTCAAGGG----
 A C G T C G T A C G T A C G T A A C T G C A T G G T A C A G T C C T G A A G T C A C G T A C G T A T C G A G C T A G C T A T G C A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAAGGMCAYKTGYYST
CAAAGGTCAG-------
 A C G T C G T A C G T A C G T A A C T G C A T G G T A C A G T C C T G A A G T C A C G T A C G T A T C G A G C T A G C T A T G C A C G T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HEY2/MA0649.1/Jaspar

Match Rank:8
Score:0.62
Offset:4
Orientation:forward strand
Alignment:AAAGGMCAYKTGYYST
----GACACGTGCC--
 C G T A C G T A C G T A A C T G C A T G G T A C A G T C C T G A A G T C A C G T A C G T A T C G A G C T A G C T A T G C A C G T
A C G T A C G T A C G T A C G T C T A G T C G A T G A C C T G A G T A C T A C G G A C T A T C G A G T C T A G C A C G T A C G T

PB0047.1_Myf6_1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AAAGGMCAYKTGYYST--
--CNGACACCTGTTCNNN
 C G T A C G T A C G T A A C T G C A T G G T A C A G T C C T G A A G T C A C G T A C G T A T C G A G C T A G C T A T G C A C G T A C G T A C G T
A C G T A C G T T G A C C T A G T C A G T G C A A G T C C T G A T G A C A T G C C G A T C T A G A G C T A G C T T A G C G A C T A G C T A G T C

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.61
Offset:4
Orientation:forward strand
Alignment:AAAGGMCAYKTGYYST
----KCCACGTGAC--
 C G T A C G T A C G T A A C T G C A T G G T A C A G T C C T G A A G T C A C G T A C G T A T C G A G C T A G C T A T G C A C G T
A C G T A C G T A C G T A C G T A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C A C G T A C G T