Information for 3-CAGAGTGCACTCT (Motif 6)

A T G C C G T A A T C G C G T A T A C G A C G T A C T G A G T C T C G A A G T C A C G T A T G C C G A T
Reverse Opposite:
C G T A A T C G C G T A C T A G A C G T A C T G A G T C G T C A A T G C A C G T A T G C C G A T A T C G
p-value:1e-11
log p-value:-2.654e+01
Information Content per bp:1.813
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif6.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.4 +/- 15.5bp
Average Position of motif in Background48.3 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------CAGAGTGCACTCT
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A A T C G C G T A T A C G A C G T A C T G A G T C T C G A A G T C A C G T A T G C C G A T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGTGCACTCT---
NNNNTGAGCACTGTNNG
 A C G T A T G C C G T A A T C G C G T A T A C G A C G T A C T G A G T C T C G A A G T C A C G T A T G C C G A T A C G T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----CAGAGTGCACTCT--
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A T C G C G T A T A C G A C G T A C T G A G T C T C G A A G T C A C G T A T G C C G A T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CAGAGTGCACTCT
CAAAGGTCAG---
 A T G C C G T A A T C G C G T A T A C G A C G T A C T G A G T C T C G A A G T C A C G T A T G C C G A T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:5
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------CAGAGTGCACTCT
CANAGNNCAAAGTCCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A A T C G C G T A T A C G A C G T A C T G A G T C T C G A A G T C A C G T A T G C C G A T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CAGAGTGCACTCT
TTGAGTGSTT---
 A T G C C G T A A T C G C G T A T A C G A C G T A C T G A G T C T C G A A G T C A C G T A T G C C G A T
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CAGAGTGCACTCT
GGCAAAAGTCCAATAA
 A C G T A C G T A C G T A T G C C G T A A T C G C G T A T A C G A C G T A C T G A G T C T C G A A G T C A C G T A T G C C G A T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CAGAGTGCACTCT
-AGGVNCCTTTGT
 A T G C C G T A A T C G C G T A T A C G A C G T A C T G A G T C T C G A A G T C A C G T A T G C C G A T
A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T

HNF4G/MA0484.1/Jaspar

Match Rank:9
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------CAGAGTGCACTCT
AGAGTCCAAAGTCCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A A T C G C G T A T A C G A C G T A C T G A G T C T C G A A G T C A C G T A T G C C G A T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGTGCACTCT
CTTGAGTGGCT---
 A C G T A T G C C G T A A T C G C G T A T A C G A C G T A C T G A G T C T C G A A G T C A C G T A T G C C G A T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T