Information for 9-TYWCTATSACAAY (Motif 10)

A C G T A G C T C G A T A G T C A G C T C G T A A C G T A T C G C G T A A G T C C G T A C G T A A G T C
Reverse Opposite:
C T A G A C G T A C G T A C T G A C G T A T G C C G T A A C G T C T G A A C T G C G T A C T G A C G T A
p-value:1e-11
log p-value:-2.657e+01
Information Content per bp:1.874
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets37.8 +/- 24.2bp
Average Position of motif in Background41.2 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TYWCTATSACAAY-
TTGCCATGGCAACC
 A C G T A G C T C G A T A G T C A G C T C G T A A C G T A T C G C G T A A G T C C G T A C G T A A G T C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

RFX4/MA0799.1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TYWCTATSACAAY-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A G C T C G A T A G T C A G C T C G T A A C G T A T C G C G T A A G T C C G T A C G T A A G T C A C G T
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TYWCTATSACAAY-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A G C T C G A T A G T C A G C T C G T A A C G T A T C G C G T A A G T C C G T A C G T A A G T C A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TYWCTATSACAAY-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A G C T C G A T A G T C A G C T C G T A A C G T A T C G C G T A A G T C C G T A C G T A A G T C A C G T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

RFX5/MA0510.2/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TYWCTATSACAAY-
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A G C T C G A T A G T C A G C T C G T A A C G T A T C G C G T A A G T C C G T A C G T A A G T C A C G T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TYWCTATSACAAY-
TTGCCATGGCAACN
 A C G T A G C T C G A T A G T C A G C T C G T A A C G T A T C G C G T A A G T C C G T A C G T A A G T C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TYWCTATSACAAY-
ATTTGCATAACAAAG
 A C G T A C G T A G C T C G A T A G T C A G C T C G T A A C G T A T C G C G T A A G T C C G T A C G T A A G T C A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TYWCTATSACAAY
KGTTGCCATGGCAAC
 A C G T A C G T A C G T A G C T C G A T A G T C A G C T C G T A A C G T A T C G C G T A A G T C C G T A C G T A A G T C
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

Rfx1/MA0509.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TYWCTATSACAAY
GTTGCCATGGCAAC
 A C G T A C G T A G C T C G A T A G T C A G C T C G T A A C G T A T C G C G T A A G T C C G T A C G T A A G T C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TYWCTATSACAAY-
ATTTGCATAACAATG
 A C G T A C G T A G C T C G A T A G T C A G C T C G T A A C G T A T C G C G T A A G T C C G T A C G T A A G T C A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G