Information for 25-GTGGTTATCACCT (Motif 34)

A C T G A C G T A C T G A C T G A C G T A C G T C G T A A C G T A G T C C G T A A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G A C G T A C T G C G T A A C G T C G T A C G T A A G T C A G T C C G T A A G T C
p-value:1e-1
log p-value:-4.164e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.72
Offset:3
Orientation:forward strand
Alignment:GTGGTTATCACCT
---ATTAACACCT
 A C T G A C G T A C T G A C T G A C G T A C G T C G T A A C G T A G T C C G T A A G T C A G T C A C G T
A C G T A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T

PH0162.1_Six2/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTGGTTATCACCT--
AATGGGGTATCACGTTT
 A C G T A C G T A C T G A C G T A C T G A C T G A C G T A C G T C G T A A C G T A G T C C G T A A G T C A G T C A C G T A C G T A C G T
C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T

PB0059.1_Six6_1/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTGGTTATCACCT--
AATAGGGTATCATATAT
 A C G T A C G T A C T G A C G T A C T G A C T G A C G T A C G T C G T A A C G T A G T C C G T A A G T C A G T C A C G T A C G T A C G T
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:4
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:GTGGTTATCACCT-
----TTMACACCTT
 A C T G A C G T A C T G A C T G A C G T A C G T C G T A A C G T A G T C C G T A A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GTGGTTATCACCT
GARTGGTCATCGCCC
 A C G T A C G T A C T G A C G T A C T G A C T G A C G T A C G T C G T A A C G T A G T C C G T A A G T C A G T C A C G T
T A C G C G T A T C A G G A C T C T A G A C T G C A G T T A G C T C G A A C G T G T A C C T A G A G T C A G T C G A T C

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GTGGTTATCACCT
-----TGACACCT
 A C T G A C G T A C T G A C T G A C G T A C G T C G T A A C G T A G T C C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:7
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GTGGTTATCACCT
---KTTCACACCT
 A C T G A C G T A C T G A C T G A C G T A C G T C G T A A C G T A G T C C G T A A G T C A G T C A C G T
A C G T A C G T A C G T C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T

Six3/MA0631.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GTGGTTATCACCT--
GATAGGGTATCACTAAT
 A C G T A C G T A C T G A C G T A C T G A C T G A C G T A C G T C G T A A C G T A G T C C G T A A G T C A G T C A C G T A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

PH0163.1_Six3/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GTGGTTATCACCT--
GATAGGGTATCACTAAT
 A C G T A C G T A C T G A C G T A C T G A C T G A C G T A C G T C G T A A C G T A G T C C G T A A G T C A G T C A C G T A C G T A C G T
C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GTGGTTATCACCT
GCTGTGGTTT------
 A C G T A C G T A C G T A C T G A C G T A C T G A C T G A C G T A C G T C G T A A C G T A G T C C G T A A G T C A G T C A C G T
A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T