Information for 7-AGCCAAGAAA (Motif 4)

C T G A A T C G A G T C G A T C T G C A T C G A T A C G G C T A C T G A G T C A
Reverse Opposite:
C A G T G A C T C A G T A T G C A G C T A C G T C T A G T C A G T A G C G A C T
p-value:1e-12
log p-value:-2.908e+01
Information Content per bp:1.658
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif7.13%
Number of Background Sequences with motif1055.7
Percentage of Background Sequences with motif2.35%
Average Position of motif in Targets52.0 +/- 26.9bp
Average Position of motif in Background49.9 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AGCCAAGAAA
CGTGCCAAG---
 A C G T A C G T C T G A A T C G A G T C G A T C T G C A T C G A T A C G G C T A C T G A G T C A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AGCCAAGAAA
TGCCAA----
 C T G A A T C G A G T C G A T C T G C A T C G A T A C G G C T A C T G A G T C A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

Mecom/MA0029.1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGCCAAGAAA---
AAGATAAGATAACA
 A C G T C T G A A T C G A G T C G A T C T G C A T C G A T A C G G C T A C T G A G T C A A C G T A C G T A C G T
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGCCAAGAAA
AAGGCAAGTGT
 A C G T C T G A A T C G A G T C G A T C T G C A T C G A T A C G G C T A C T G A G T C A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGCCAAGAAA
ACTAGCCAATCA-
 A C G T A C G T A C G T C T G A A T C G A G T C G A T C T G C A T C G A T A C G G C T A C T G A G T C A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGCCAAGAAA--
--CCAATAAAAC
 C T G A A T C G A G T C G A T C T G C A T C G A T A C G G C T A C T G A G T C A A C G T A C G T
A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGCCAAGAAA-----
AACCCAATAAAATTCG
 A C G T C T G A A T C G A G T C G A T C T G C A T C G A T A C G G C T A C T G A G T C A A C G T A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGCCAAGAAA
GGTGCCAAGT--
 A C G T A C G T C T G A A T C G A G T C G A T C T G C A T C G A T A C G G C T A C T G A G T C A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGCCAAGAAA--
--CCAATAAAAA
 C T G A A T C G A G T C G A T C T G C A T C G A T A C G G C T A C T G A G T C A A C G T A C G T
A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGCCAAGAAA-
-NACAGGAAAT
 C T G A A T C G A G T C G A T C T G C A T C G A T A C G G C T A C T G A G T C A A C G T
A C G T T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T