Information for 5-TCSCGYGTGGCMC (Motif 10)

A C G T A G T C A T G C A G T C C T A G A G C T A C T G A C G T A C T G A C T G A G T C G T A C A G T C
Reverse Opposite:
A C T G C A T G C T A G A G T C A G T C C G T A A G T C C T G A A G T C C T A G A T C G C T A G G T C A
p-value:1e-10
log p-value:-2.303e+01
Information Content per bp:1.879
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif13.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets53.2 +/- 24.3bp
Average Position of motif in Background49.1 +/- 23.2bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hes1/MA1099.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TCSCGYGTGGCMC
-NNCGCGTGNN--
 A C G T A G T C A T G C A G T C C T A G A G C T A C T G A C G T A C T G A C T G A G T C G T A C A G T C
A C G T C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C A C G T A C G T

PB0147.1_Max_2/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TCSCGYGTGGCMC
NNGTCGCGTGNCAC
 A C G T A C G T A G T C A T G C A G T C C T A G A G C T A C T G A C G T A C T G A C T G A G T C G T A C A G T C
G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TCSCGYGTGGCMC
---TGCGTG----
 A C G T A G T C A T G C A G T C C T A G A G C T A C T G A C G T A C T G A C T G A G T C G T A C A G T C
A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T

Mycn/MA0104.3/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TCSCGYGTGGCMC
---CACGTGGC--
 A C G T A G T C A T G C A G T C C T A G A G C T A C T G A C G T A C T G A C T G A G T C G T A C A G T C
A C G T A C G T A C G T A G T C C G T A A G T C A C T G A C G T A C T G A T C G G A T C A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TCSCGYGTGGCMC
-TGGGTGTGGC--
 A C G T A G T C A T G C A G T C C T A G A G C T A C T G A C G T A C T G A C T G A G T C G T A C A G T C
A C G T C G A T A C T G A C T G A C T G A G C T A C T G A C G T C T A G C A T G G A T C A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TCSCGYGTGGCMC
-CGTGGGTGGTCC
 A C G T A G T C A T G C A G T C C T A G A G C T A C T G A C G T A C T G A C T G A G T C G T A C A G T C
A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TCSCGYGTGGCMC
--CCACGTGGNN-
 A C G T A G T C A T G C A G T C C T A G A G C T A C T G A C G T A C T G A C T G A G T C G T A C A G T C
A C G T A C G T T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G A G C T A T G C A C G T

c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TCSCGYGTGGCMC
--CCACGTGGNN-
 A C G T A G T C A T G C A G T C C T A G A G C T A C T G A C G T A C T G A C T G A G T C G T A C A G T C
A C G T A C G T T A G C A G T C C G T A A G T C C T A G A G C T A C T G A T C G A G T C A G T C A C G T

Klf12/MA0742.1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TCSCGYGTGGCMC
NANAAGGGCGTGGTC-
 A C G T A C G T A C G T A C G T A G T C A T G C A G T C C T A G A G C T A C T G A C G T A C T G A C T G A G T C G T A C A G T C
C G T A C G T A C G A T C G T A C G T A C T A G T C A G C T A G G A T C C A T G A C G T A T C G C A T G A G C T G T A C A C G T

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TCSCGYGTGGCMC
---CACGTGGN--
 A C G T A G T C A T G C A G T C C T A G A G C T A C T G A C G T A C T G A C T G A G T C G T A C A G T C
A C G T A C G T A C G T G T A C C T G A A G T C C T A G G A C T A C T G A T C G A G C T A C G T A C G T