Information for 1-GMGWSCTSCCAGA (Motif 1)

A C T G G T C A A C T G C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G C G T A
Reverse Opposite:
G A C T A G T C A C G T A C T G A C T G A T G C G T C A A C T G A T G C C G T A A G T C A C G T A G T C
p-value:1e-15
log p-value:-3.461e+01
Information Content per bp:1.874
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.2 +/- 25.2bp
Average Position of motif in Background56.4 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:GMGWSCTSCCAGA--
-----ATGCCAGACN
 A C T G G T C A A C T G C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GMGWSCTSCCAGA
CNGTCCTCCC---
 A C T G G T C A A C T G C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G C G T A
A T G C T C G A T A C G A C G T A T G C A G T C A C G T A G T C A G T C G A T C A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GMGWSCTSCCAGA
TGGCAGNCTGCCAG-
 A C G T A C G T A C T G G T C A A C T G C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G C G T A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GMGWSCTSCCAGA-
TGACANARRCCAGRC
 A C G T A C T G G T C A A C T G C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G C G T A A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GMGWSCTSCCAGA
-----TTGCCAAG
 A C T G G T C A A C T G C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GMGWSCTSCCAGA
TTGGCATGGTGCCA--
 A C G T A C G T A C G T A C T G G T C A A C T G C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G C G T A
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:GMGWSCTSCCAGA-----
--------CCAGACRSVB
 A C T G G T C A A C T G C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:GMGWSCTSCCAGA---
--------CCAGACAG
 A C T G G T C A A C T G C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GMGWSCTSCCAGA--
---AGGTGHCAGACA
 A C T G G T C A A C T G C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GMGWSCTSCCAGA
------TGCCAA-
 A C T G G T C A A C T G C G A T A T C G A G T C A C G T A T C G A G T C A G T C C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T