Information for 3-TRACCAYKMAWAMYAA (Motif 4)

A C G T T C G A C G T A A G T C A G T C C G T A A G T C A C G T G T C A C G T A C G A T C G T A G T C A G A T C C T G A C G T A
Reverse Opposite:
A C G T A G C T C T A G A C G T A C G T G C A T A C G T A C G T T G A C C T A G C G A T A C T G A C T G A C G T A G C T C G T A
p-value:1e-13
log p-value:-3.091e+01
Information Content per bp:1.803
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.2 +/- 30.2bp
Average Position of motif in Background31.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TRACCAYKMAWAMYAA
ACTAGCCAATCA------
 A C G T A C G T A C G T T C G A C G T A A G T C A G T C C G T A A G T C A C G T G T C A C G T A C G A T C G T A G T C A G A T C C T G A C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TRACCAYKMAWAMYAA
TGACCYCT--------
 A C G T T C G A C G T A A G T C A G T C C G T A A G T C A C G T G T C A C G T A C G A T C G T A G T C A G A T C C T G A C G T A
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TRACCAYKMAWAMYAA
CATAACCACTTAACAAC-
 A C G T A C G T A C G T T C G A C G T A A G T C A G T C C G T A A G T C A C G T G T C A C G T A C G A T C G T A G T C A G A T C C T G A C G T A
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C A C G T

Esrra/MA0592.2/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TRACCAYKMAWAMYAA
ATGACCTTGAA------
 A C G T A C G T T C G A C G T A A G T C A G T C C G T A A G T C A C G T G T C A C G T A C G A T C G T A G T C A G A T C C T G A C G T A
C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:5
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----TRACCAYKMAWAMYAA
TGTCGTGACCCCTTAAT----
 A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C A G T C C G T A A G T C A C G T G T C A C G T A C G A T C G T A G T C A G A T C C T G A C G T A
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:6
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----TRACCAYKMAWAMYAA
NNNNTGACCTTTNNNN----
 A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C A G T C C G T A A G T C A C G T G T C A C G T A C G A T C G T A G T C A G A T C C T G A C G T A
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A A C G T A C G T A C G T A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:7
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--TRACCAYKMAWAMYAA
GTTAACTAGN--------
 A C G T A C G T A C G T T C G A C G T A A G T C A G T C C G T A A G T C A C G T G T C A C G T A C G A T C G T A G T C A G A T C C T G A C G T A
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TRACCAYKMAWAMYAA
TGACCT----------
 A C G T T C G A C G T A A G T C A G T C C G T A A G T C A C G T G T C A C G T A C G A T C G T A G T C A G A T C C T G A C G T A
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TRACCAYKMAWAMYAA
NWAACCACADNN-----
 A C G T A C G T T C G A C G T A A G T C A G T C C G T A A G T C A C G T G T C A C G T A C G A T C G T A G T C A G A T C C T G A C G T A
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TRACCAYKMAWAMYAA
TGACCTTGAT------
 A C G T T C G A C G T A A G T C A G T C C G T A A G T C A C G T G T C A C G T A C G A T C G T A G T C A G A T C C T G A C G T A
A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T